View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_117 (Length: 248)
Name: NF9557_low_117
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_117 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 42743573 - 42743359
Alignment:
| Q |
20 |
ggacgcttacggttgctgcaagcacaattgatagagatttagcaagttatgttattcttggtaacaagaaaatattcaaggtatattgtttatatctcta |
119 |
Q |
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||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42743573 |
ggacgctcacagttgctgcaagcacaatagatagagatttcacaagttatgttattcttggtaacaagaaaatattcaaggtatattgtttatatctcta |
42743474 |
T |
|
| Q |
120 |
atttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatgaattaccgcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42743473 |
atttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatgaattaccgcc |
42743374 |
T |
|
| Q |
220 |
tcataagttgtaccc |
234 |
Q |
| |
|
||||||||||||||| |
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|
| T |
42743373 |
tcataagttgtaccc |
42743359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 42752932 - 42752718
Alignment:
| Q |
20 |
ggacgcttacggttgctgcaagcacaattgatagagatttagcaagttatgttattcttggtaacaagaaaatattcaaggtatattgtttatatctcta |
119 |
Q |
| |
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||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42752932 |
ggacgctcacagttgctgcaagcacaatagatagagatttcacaagttatgttattcttggtaacaagaaaatattcaaggtatattgtttatatctcta |
42752833 |
T |
|
| Q |
120 |
atttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatgaattaccgcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42752832 |
atttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatgaattaccgcc |
42752733 |
T |
|
| Q |
220 |
tcataagttgtaccc |
234 |
Q |
| |
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||||||||||||||| |
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| T |
42752732 |
tcataagttgtaccc |
42752718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 42762554 - 42762462
Alignment:
| Q |
20 |
ggacgcttacggttgctgcaagcacaattgatagagatttagcaagttatgttattcttggtaacaagaaaatattcaaggtatattgtttat |
112 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
42762554 |
ggacgctcacagttgctgcaagcacaattgatagagatttcacaagttatgttattcttggtaacaaaaaaatactcaaggtatattgtttat |
42762462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 234
Target Start/End: Complemental strand, 42762308 - 42762186
Alignment:
| Q |
108 |
tttatatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagca |
207 |
Q |
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|
||||||||||||| |||||||||||||||||| ||| ||||||| ||||||| |||||||||||| | |||||||||||| ||||||||||||| |
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| T |
42762308 |
tttatatctctaacttcctttgttattttaatatttt----tagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagct |
42762213 |
T |
|
| Q |
208 |
tgaattaccgcctcataagttgtaccc |
234 |
Q |
| |
|
||||||||| ||||||||||||||||| |
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|
| T |
42762212 |
tgaattaccacctcataagttgtaccc |
42762186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 42734948 - 42735019
Alignment:
| Q |
31 |
gttgctgcaagcacaattgatagagatttagcaagttatgttattcttggtaacaagaaaatattcaaggta |
102 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||| |||||||| |
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|
| T |
42734948 |
gttgctgcaagcacaattgatagagacttcacaagttatgttgtacttggtaacaagaaaatactcaaggta |
42735019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 42769420 - 42769345
Alignment:
| Q |
31 |
gttgctgcaagcacaattgatagagatttagcaagttatgttattcttggtaacaagaaaatattcaaggtatatt |
106 |
Q |
| |
|
||||||||||| |||| |||||||| || | |||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
42769420 |
gttgctgcaagtacaacggatagagaattcactagttatgttactcttggtaacaagaaaatactcaaggtatatt |
42769345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 42716942 - 42716861
Alignment:
| Q |
26 |
ttacggttgctgcaagcacaattgatagagatttagcaagttatgttattcttggtaacaagaaaatattcaaggtatattg |
107 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || | |||| ||||| |||||| |||| |||| | ||||||||||||| |
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|
| T |
42716942 |
ttacagttgctgcaagtacaattgatagagagttcactagttttgttacccttggtgacaacaaaacactcaaggtatattg |
42716861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 23040901 - 23041107
Alignment:
| Q |
20 |
ggacgcttacggttgctgcaagcacaattgatagagatttagcaagttatgttattcttggtaacaagaaaatattcaaggtatattgtttatatctcta |
119 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23040901 |
ggacacttacagttgctgcaagcacaattgatcgagatttcacaagctatgttattcttggtaacaagaaaatactcaaggtatattgtttatatctcta |
23041000 |
T |
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| Q |
120 |
atttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatgaattaccgcc |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
23041001 |
atttcctttgttattttaattc-----tttagtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcagagcatgaactaccgcg |
23041095 |
T |
|
| Q |
220 |
tcataagttgta |
231 |
Q |
| |
|
||||||||||| |
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| T |
23041096 |
gcataagttgta |
23041107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 42314125 - 42314170
Alignment:
| Q |
28 |
acggttgctgcaagcacaattgatagagatttagcaagttatgtta |
73 |
Q |
| |
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||||||||||| ||||||||||||||||| || || |||||||||| |
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| T |
42314125 |
acggttgctgctagcacaattgatagagacttcgccagttatgtta |
42314170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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