View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9557_low_120 (Length: 245)
Name: NF9557_low_120
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_120 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 43394846 - 43395066
Alignment:
| Q |
18 |
cttcctgcatctgcattttcacacaaaa-caccaacaattctatcaatcctcaagatacatagaaaaatatatattaaaagaagaataatattccttgat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43394846 |
cttcctgcatctgcattttcacacaaaaacaccaacaattctattaatcctcaagatacatagaaaaatatatattaaaagaagaataatattccttgat |
43394945 |
T |
|
| Q |
117 |
gaaatgacagtgtactaataacatagatttaatgcaagctaaattacccttctgcatttcctgtccggcaatattccctaattagagttgattctgcttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43394946 |
gaaatgacagtgtactaataacatagatttaatgcaagctaaattacccttctgcatttcctgtcctgcaatattccctaattagagttgattctgcttt |
43395045 |
T |
|
| Q |
217 |
cacctttttggcccctatgct |
237 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
43395046 |
cacctttttggccccaatgct |
43395066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 43407183 - 43407284
Alignment:
| Q |
136 |
aacatagatttaatgcaagctaaattacccttctgcatttcctgtccggcaatattccctaattagagttgattctgctttcacctttttggcccctatg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43407183 |
aacatagatttaatgcaagctaaattacccttctgcatttcctgtcctgcaatattccctaattagagttgattctgctttcacctttttggccccaatg |
43407282 |
T |
|
| Q |
236 |
ct |
237 |
Q |
| |
|
|| |
|
|
| T |
43407283 |
ct |
43407284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University