View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_123 (Length: 241)
Name: NF9557_low_123
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_123 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 1192364 - 1192586
Alignment:
| Q |
19 |
gcaccacacgccaagagcgtcaccgccaaagtagcatcatccgattgcaattcaacattctttcacgtaagcaatctcttcattctttcacataaaagaa |
118 |
Q |
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| T |
1192364 |
gcaccacacgccaagagcgtcaccgccaaagtagcatcatccggttgcaattcaacattctttcacgtaagcaatctcttcattctttcaaataaaagaa |
1192463 |
T |
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| Q |
119 |
atctatatcacttgatgcagtttacaaaaaataggtactaagatgtaaagatgttatgtgatctacatcattcgacaatctgtacaaataaattttacga |
218 |
Q |
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| T |
1192464 |
atctatatcacttgatgcagtttacaaaaaataggtactaagatgtaaagatgttatgtgatctacatcattcgacaatctgtacaaataaattttacga |
1192563 |
T |
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| Q |
219 |
gtacatgaaatcgtcatgatgcc |
241 |
Q |
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| T |
1192564 |
gtacatgaaattgtcatgatgcc |
1192586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 155993 - 156045
Alignment:
| Q |
19 |
gcaccacacgccaagagcgtcaccgccaaagtagcatcatccgattgcaattc |
71 |
Q |
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| T |
155993 |
gcaccacacgctgagagcgtcaccaccaaagttgcatgatccggttgcaattc |
156045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 12993659 - 12993817
Alignment:
| Q |
85 |
gtaagcaatctcttcattctttcacataaaagaaatctatatcacttgatgcagtttac-aaaaaataggtactaagatgtaaagatgttatgtgatcta |
183 |
Q |
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| T |
12993659 |
gtaagcaatcttctcattctttcatgtaaaagaaatctatatcacttgatgcattttacgaaaaaataggtactaagatgtaaatatggtatgtgatcta |
12993758 |
T |
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| Q |
184 |
catcattcgacaatctgtacaaataaa-ttttacgagtacatgaaatcgtcatgatgcc |
241 |
Q |
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|||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||| |
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| T |
12993759 |
catcattcaacaatctgtacaaataaatttttaagagttcatgaaatcgtcatgatgcc |
12993817 |
T |
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