View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_125 (Length: 241)
Name: NF9557_low_125
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_125 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 29019804 - 29019675
Alignment:
| Q |
85 |
aattcatattctttgaaaattaatgaagtaatcacagttaagaaaag---acggaaaaacttattgtattttcttaagaattgaggaagttgttccaagt |
181 |
Q |
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| T |
29019804 |
aattcatattatttgaaaattaatgaagtaatcatagttaagaaaagtcgacggaaaaactcattgtattttcttaagaattgaggaagttgttccaagt |
29019705 |
T |
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| Q |
182 |
ttgaaggaagtgtgtatt-ggaacactcat |
210 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
29019704 |
ttgaaggaagtgtgtattgggaacactcat |
29019675 |
T |
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