View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_127 (Length: 240)
Name: NF9557_low_127
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_127 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 54271651 - 54271444
Alignment:
| Q |
16 |
gagaggatttgatagatgagattggtgaaggggatgtccatgaagattggaattcgaaggaaagtggatttggtttgaaagagtggatttcgatggaaga |
115 |
Q |
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| T |
54271651 |
gagaggatttgatagatgagattggtgaaggggatgtccatgaagattggaattcgaaggaaagtggatttggtttgaaagagtggatttcgatggaaga |
54271552 |
T |
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| Q |
116 |
gaggttggaatcgaaatcggaagtagcgagaacggcgaagcggttgaatgcggatagaactggaagccaacgaacggcgtcgatgtatttgtattgtggg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54271551 |
gaggttggaatcgaaatcggaagtagcgagaacggcgaagcggttgaatgcggatagaactggaagccaacgaacggcgtcgatgtatttgtattgtggg |
54271452 |
T |
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| Q |
216 |
aatctgtg |
223 |
Q |
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|||||||| |
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| T |
54271451 |
aatctgtg |
54271444 |
T |
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