View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_13 (Length: 487)
Name: NF9557_low_13
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 28046348 - 28046817
Alignment:
| Q |
1 |
gaagaaccaattgaagaggaggtatatggcagatctctgctagggaagctttggactgataatgcttacaacgttagagcttttaagcaaacgattgtgg |
100 |
Q |
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| T |
28046348 |
gaagaaccaattgaagaggaggtatatggcagatctctgctagggaagctttggactgataatgcttacaatgttagagcttttaagcaaacgattgtgg |
28046447 |
T |
|
| Q |
101 |
aattctggaggctcaaaaatccagttgaaacacaagaacttggtaagaatctttaccttttccggttttgtaataaacgtgatatggaaaatgtgataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28046448 |
aattctggaggctcaaaaatccagttgaaacacaagaacttggtaagaatctttaccttttccggttttgtaataaacgtgatctggaaaatgtgataaa |
28046547 |
T |
|
| Q |
201 |
aaatggaccttggagctttgatagaaatattctggtactgaagagggttacaggtactgaacaaccttctgaaatagaaatgaattcaatgtcattttgg |
300 |
Q |
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| T |
28046548 |
aaatggaccttggagctttgatagaaatattctggtattgaagagggttacaggtactgaacaaccttctgaaatagaaatgaattcaatgtcattttgg |
28046647 |
T |
|
| Q |
301 |
gcaaggatttatgatttaccccttaagttaagattcgaatccatggcaaaaaagctcggtaatgtgatgggtcaatttgttgaagctgatgctaaagaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28046648 |
gcaaggatttatgatttaccccttaagttaagattcgaatccatggcaaaaaagctcggtaatgtgatgggtcaatttgttgaagctgatgttaaagaaa |
28046747 |
T |
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| Q |
401 |
gccaccgtttgggtcgttttttgagaactaaagtcaccattaatctcacaaagccgctgaaaaggggaac |
470 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28046748 |
gccaccgtctgggtcgttttttgagaactaaagtcaccattaatctcacaaagccgctgaaaaggggaac |
28046817 |
T |
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