View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_131 (Length: 239)
Name: NF9557_low_131
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_131 |
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| [»] chr6 (10 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 28074562 - 28074339
Alignment:
| Q |
16 |
aattataagatagataactatgaatcgtctttattggaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28074562 |
aattataagatagataactatgaatcgtctttattggaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatttt |
28074463 |
T |
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| Q |
116 |
ttctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtga |
215 |
Q |
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| T |
28074462 |
ttctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtga |
28074363 |
T |
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| Q |
216 |
cttcttcaatgtctttagcgtcga |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
28074362 |
cttcttcaatgtctttagcgtcga |
28074339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 27916819 - 27916600
Alignment:
| Q |
19 |
tataagatagataactatgaatcgtctttattggaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttc |
118 |
Q |
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||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |
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| T |
27916819 |
tataagacagataactatgaatgatctctattggaaatgaagcatggagatatatatgcaatatagagaagtaatagaaaaa-tgaaacaacattttttc |
27916721 |
T |
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| Q |
119 |
tattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgactt |
218 |
Q |
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| T |
27916720 |
tatcgacagaaacacaacaaggtaatggaaggaaggaatgaccttatgacttgttgaacatgagggctccgcaagagttttgaaaaaagagttgtgactt |
27916621 |
T |
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| Q |
219 |
cttcaatgtctttagcgtcga |
239 |
Q |
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|||||||||||||||| |||| |
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| T |
27916620 |
cttcaatgtctttagcttcga |
27916600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 28035182 - 28034958
Alignment:
| Q |
16 |
aattataagatagataactatgaatcgtctttattggaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt-t |
114 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
28035182 |
aattataaggcagataactatgaatggtctttattggaaatgaagaatggagatatatatgcaatgtagagaagttatagaacaaatgaaacaacatttt |
28035083 |
T |
|
| Q |
115 |
tttctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtg |
214 |
Q |
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| T |
28035082 |
tttctctcgacagatgcaaaacatggtaacggagtgaatgaatgaccttatgacttgttgaacgtgagggctccgcaagaatcttgaaaacagagttgtg |
28034983 |
T |
|
| Q |
215 |
acttcttcaatgtctttagcgtcga |
239 |
Q |
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||||| ||||||||||||||||||| |
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| T |
28034982 |
acttcctcaatgtctttagcgtcga |
28034958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 28047379 - 28047164
Alignment:
| Q |
16 |
aattataagatagataactatgaatcgtctttattggaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatttt |
115 |
Q |
| |
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||||||||| |||||||||| ||| | |||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| |
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| T |
28047379 |
aattataaggcagataactatcaatggactttattggaaatgaagcaaggagattcgtatgcaatgtacagaa---------aaaatgaaacaacatttt |
28047289 |
T |
|
| Q |
116 |
tt-ctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtg |
214 |
Q |
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|| |||| |||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
28047288 |
tttctatcgacagaaacacaaaaaggtaatggaagtaataaatgaccttatgacttgttgaacgcgagggctccgcaagaatcttgcaaaatgagttgtg |
28047189 |
T |
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| Q |
215 |
acttcttcaatgtctttagcgtcga |
239 |
Q |
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||||||||||||||||||||||||| |
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| T |
28047188 |
acttcttcaatgtctttagcgtcga |
28047164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 28017375 - 28017204
Alignment:
| Q |
68 |
atatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatga |
167 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
28017375 |
atatatatgcaatatagagaagttatagaaaaaatgaaacaacattttttctatcgacagaaacacaacaaggtaatggtaggaaagaatgaccttatga |
28017276 |
T |
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| Q |
168 |
cttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcga |
239 |
Q |
| |
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||||||||||| |||| | || |||| ||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
28017275 |
cttgttgaacgtgaggattttgtaagagtcttgcaaaatgagttgtgacttcttcaatagctttagcgtcga |
28017204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 28001859 - 28001777
Alignment:
| Q |
34 |
tatgaatcgtctttattggaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttt |
116 |
Q |
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||||||| |||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
28001859 |
tatgaatggtctttattgaaaatgaagcatggagatacatatgcaaggtagagaagttatagaaaaaatgaaacaatattttt |
28001777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 28091225 - 28091165
Alignment:
| Q |
53 |
aaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt |
113 |
Q |
| |
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||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
28091225 |
aaatgaaacatggagatatatatgctatgtaaagaagttatagaaaaaatgaaacaacatt |
28091165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 28091068 - 28090989
Alignment:
| Q |
155 |
aatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagc |
234 |
Q |
| |
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||||||||||| ||| |||||| ||||||||| |||| ||||||| || |||||||||||||||||||||||||||| |
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| T |
28091068 |
aatgaccttataactccttgaacacgagggctccgcaaaaatcttgcgaagagagttgtgacttcttcaatgtctttagc |
28090989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 27917483 - 27917444
Alignment:
| Q |
74 |
atgcaatgtagagaagttatagaaaaaatgaaacaacatt |
113 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
27917483 |
atgcaatgtagaaaagttatagaaaaaatgaaacaacatt |
27917444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 28001689 - 28001612
Alignment:
| Q |
155 |
aatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtcttta |
232 |
Q |
| |
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||||||||||||||| |||| | |||||||| ||||||||| || |||| |||||| || |||||||||||||||| |
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| T |
28001689 |
aatgaccttatgactccttgagtgtgagggctccgcaagaatcctgcaaaaagagttgcgagttcttcaatgtcttta |
28001612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 1439929 - 1439851
Alignment:
| Q |
34 |
tatgaatcgtctttattggaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt |
113 |
Q |
| |
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||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1439929 |
tatgaatggtctttattc-aaatgaagcatggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt |
1439851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 1439753 - 1439677
Alignment:
| Q |
159 |
accttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcg |
235 |
Q |
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||||||| ||| |||||| ||||||||| |||||||||||| ||| |||| || ||||||||||||||||||||| |
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| T |
1439753 |
accttataactccttgaacacgagggctccgcaagaatcttgcgaaaagagtggtcacttcttcaatgtctttagcg |
1439677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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