View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_134 (Length: 238)
Name: NF9557_low_134
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_134 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 50265454 - 50265232
Alignment:
| Q |
1 |
atagttgcataaacatacctcaagagtcaagactcaagtaccttnnnnnnnnnnnnnnnnnnnnngataattaaggtcaaacataagcagttggcgaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50265454 |
atagttgcataaacatacctcaagagtcaagactcaagtaccttaaaaaagccaaaagtaaaaaagataattaaggtcaaacataagcagttggcgaatg |
50265355 |
T |
|
| Q |
101 |
acatgtagtaacgtggctaatccaatgcacacattcatcatgttcattttgtttctatttgagtaacttaacagcgacacacctaaaagtgggatgtagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50265354 |
acatgtagtaacgtggctaatccaatgcacacattcatcatgttcattttgtttctatttgagtaacttaacagcgacacacctaaaagtgggatgtagg |
50265255 |
T |
|
| Q |
201 |
aatgattaatttcacattgaata |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
50265254 |
aatgattaatttcacattgaata |
50265232 |
T |
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