View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_140 (Length: 237)
Name: NF9557_low_140
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_140 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 27745071 - 27744865
Alignment:
| Q |
12 |
aagcataggatgaggacggtgagggtgaaggctactagtgccggtggggtcttatgtgctggagccggcggggggtcgtacttagattctgataaagaca |
111 |
Q |
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| T |
27745071 |
aagcataggatgaggacggtgagggtgaaggctactagtgccggtggggtcttatgtgctggagccggtggggggtcgtacttagattctgataaagaca |
27744972 |
T |
|
| Q |
112 |
ttgtcgaattgagaaactatcaacaatggactgttattggttttcaagatgagtagaggacgatttattcttgaccttccactctctcttctttgcatgg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27744971 |
ttgtcgaattgagaaactatcaacaatggactgttattggttttcaagatgagtagaggatgatttattcttgaccttccactctctcttctttgcatgg |
27744872 |
T |
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| Q |
212 |
ttgagag |
218 |
Q |
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||||||| |
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| T |
27744871 |
ttgagag |
27744865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 32844751 - 32844545
Alignment:
| Q |
12 |
aagcataggatgaggacggtgagggtgaaggctactagtgccggtggggtcttatgtgctggagccggcggggggtcgtacttagattctgataaagaca |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||| | || ||| ||||| |||| ||||||||||| || ||| |||||| |
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| T |
32844751 |
aagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagaca |
32844652 |
T |
|
| Q |
112 |
ttgtcgaattgagaaactatcaacaatggactgttattggttttcaagatgagtagaggacgatttattcttgaccttccactctctcttctttgcatgg |
211 |
Q |
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||| || ||||||||||||||||||||| | ||||||||||||||| ||| ||| | ||||||||| |||||||||| || |||||||||||||| |
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| T |
32844651 |
ttggcgggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaatgatttattccggaccttccaccctttcttctttgcatgg |
32844552 |
T |
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| Q |
212 |
ttgagag |
218 |
Q |
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|||||| |
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| T |
32844551 |
atgagag |
32844545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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