View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_141 (Length: 236)
Name: NF9557_low_141
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_141 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 6577891 - 6578097
Alignment:
| Q |
12 |
aattgatgagggtgggttactgcagatgtgataaagagaaatgcagagaaaatcaaagaaccgctaagaaatcaaggaacccannnnnnnaattagagaa |
111 |
Q |
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| T |
6577891 |
aattgatgagggtgggttactgcagatgtgataaagagaaatgcagagaaaatcaaagaaccgctaagaaatcaaggaacccatttttttaattagagaa |
6577990 |
T |
|
| Q |
112 |
ataactcatgtttaccatgtagaaaaagcaagtatttaacttgttgagctttgatagtgtgttttagcagaattctttttgatgattattaaaataggtt |
211 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6577991 |
ataactcatgtttaccatatagaaagagcaagtatttaacttgttgagctttgatagtgtgttttagcagaattctttttgatgattattaaaataggtt |
6578090 |
T |
|
| Q |
212 |
tccaatt |
218 |
Q |
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||||||| |
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| T |
6578091 |
tccaatt |
6578097 |
T |
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