View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_143 (Length: 228)
Name: NF9557_low_143
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_143 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 50265815 - 50265588
Alignment:
| Q |
1 |
ctgaaacgatgctaatgggagacagcctaatgttagcccgtagtgtttgcactccactgacctcaattgtttctcaaaatgtcaacaatgtaatgctaca |
100 |
Q |
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| T |
50265815 |
ctgaaacgatgctaatgggagacagcctaatgttagcccgtagtgtttgcactccactgacctcaattgtttctcaaaatgtcaacaatgtaatgctaca |
50265716 |
T |
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| Q |
101 |
atgcttttaaggcttttcctcttttcctttnnnnnnncattttatttagaaatgatttttgtgtttacgacaattgtttttcctatccaaaaatacctaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||||| | |||| |
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| T |
50265715 |
atgcttttaaggcttttcctcttttcctttaaaaaaacattttatttagaaatgatttttgtgtttaccacgattgtttttcctattcaaaaagatctaa |
50265616 |
T |
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| Q |
201 |
cggcgtagtttgtggcttgcttgccttt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
50265615 |
cggcgtagtttgtggcttgcttgccttt |
50265588 |
T |
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