View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_150 (Length: 219)
Name: NF9557_low_150
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_150 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: scaffold0667 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2786 - 2994
Alignment:
| Q |
1 |
ccctttgaaactaaagttgtcactgccttcttaacagagtttgagtaaatcaaagtccttctacaacaaacacatacaaatagatttggtttctccatag |
100 |
Q |
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| T |
2786 |
cccttttaaactaaagatgtcactgccttcttaacagagtttgagtaaatcaaagtccttctacaacaaacacatacaaatagatttggtttctccatag |
2885 |
T |
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| Q |
101 |
aattggataaggttttgatgttccacgagacttctccaatcctttttattttacccaaacccttacaaaccctctaccccctttacattttctatatcct |
200 |
Q |
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| T |
2886 |
aattggataaggttttgatgttccacgagacttctccaatcctttttattttacc----------caaaccctctaccccctttacattttctatatcct |
2975 |
T |
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| Q |
201 |
tcttctacgctgtgttttt |
219 |
Q |
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|||||||| |||||||||| |
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| T |
2976 |
tcttctacactgtgttttt |
2994 |
T |
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