View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_153 (Length: 205)
Name: NF9557_low_153
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_153 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 36723895 - 36723769
Alignment:
| Q |
65 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
164 |
Q |
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| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
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| Q |
165 |
cacataatactaactcccacacctatg |
191 |
Q |
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| T |
36723795 |
cacataatactagctctcacacctatg |
36723769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 36724312 - 36724252
Alignment:
| Q |
18 |
cttagaacaagcatataagataatggtgaatttagatgcattatagatgcttgtagacagt |
78 |
Q |
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| T |
36724312 |
cttagaacaagcatataagatagtagtgaatttagatgcattatagatgcttgtagacagt |
36724252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 717447 - 717577
Alignment:
| Q |
43 |
gtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgc |
141 |
Q |
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| T |
717447 |
gtgaatttggatgtattatagttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcac |
717546 |
T |
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| Q |
142 |
tcatgagttagctcagatagtcccacataat |
172 |
Q |
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| T |
717547 |
ttacgagttagctcatatagccccacataat |
717577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 712228 - 712314
Alignment:
| Q |
34 |
aagataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
120 |
Q |
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| T |
712228 |
aagatagttgtgaatttggatgtattatacttgcatgtagatagttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 14541162 - 14541248
Alignment:
| Q |
34 |
aagataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
120 |
Q |
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| T |
14541162 |
aagataatagtaaatttagatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
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