View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_154 (Length: 204)
Name: NF9557_low_154
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_154 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 43463600 - 43463759
Alignment:
| Q |
20 |
gttaataacgtttatttatcgcaatttccgtagtatcacaaaatttctttctcaatttgatgtagtaattggcggtattgagttttttgaaaaagttcan |
119 |
Q |
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| T |
43463600 |
gttaataacgtttatttatcgcaatttccgtagtatcacaaaatttctttctcaatttgatgtagtaactggcggtattgagttttttgaaaaagttcat |
43463699 |
T |
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| Q |
120 |
nnnnnnnacaactaatacgaaatttatcgcaattcaaaattataaacaaaaaggttcatg |
179 |
Q |
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| T |
43463700 |
tttttttacaactaatacgaaatttatcgtaattcaaaattataaacaaaaaggttcatg |
43463759 |
T |
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