View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_16 (Length: 484)
Name: NF9557_low_16
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 56321879 - 56321414
Alignment:
| Q |
1 |
tttatatcttaggtagaatggtagaaggacaaaatacaagagaacgaggatagtaggatgaagtgtatatgtgtggaaggtgaaagtgaagatgaaggta |
100 |
Q |
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| T |
56321879 |
tttatatcttaggtagtatggtagaaggacaaaatacaagagaacgaggatagtaggatgaagtgtatatgtgcggaaggtgaaagtgaagatgaaggta |
56321780 |
T |
|
| Q |
101 |
gttcaaattcaatgattcccgaacccaggctcaagctggtatccccatggattgttgcttgcccaattccattggtctctgcacatctcctctataccgt |
200 |
Q |
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| T |
56321779 |
gttcaaattcaatgattcccgaacccaggctcaagctggtatccccatggattgttgcttgcccaattccattggtctctgcacatctcctctataccgt |
56321680 |
T |
|
| Q |
201 |
attttgccctgtcaatcaatcgcactcgttttattattagttaattaaaagaacgcaataatccctcctcccttcctcccaatgaaacatagtagtactt |
300 |
Q |
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| T |
56321679 |
attttgccctgtcaatcaatcgcactctttttattattagttaattaaaagaatgtaataatccctcctcccttcctcccaatgaaacatagtagtactt |
56321580 |
T |
|
| Q |
301 |
acttccaaccaagttcattttcagccttacgcgtagatgcatagatagcagtagcatctccgggcctccttggacacattttaataggaattttctggaa |
400 |
Q |
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| T |
56321579 |
acttccaaccaagttcattttcagccttacgcgtagatgcatagatagcagtagcatctccgggcctccttggacacattttaataggaattttctggaa |
56321480 |
T |
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| Q |
401 |
aacagatccaagaaggagctaaatgaaggattaagaacacaatacaatacattcggaaacgcatac |
466 |
Q |
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| T |
56321479 |
aacagatccaagaaggagctaaatgaaggattaagaacacaatacaatacattcggaaacgcatac |
56321414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 40662203 - 40662271
Alignment:
| Q |
143 |
ccccatggattgttgcttgcccaattccattggtctctgcacatctcctctataccgtattttgccctg |
211 |
Q |
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| T |
40662203 |
ccccatgggttgttcttagcccaattccactgatccctgcacatctcctctacaccatatttggccctg |
40662271 |
T |
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