View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_23 (Length: 466)
Name: NF9557_low_23
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 282 - 453
Target Start/End: Complemental strand, 35806418 - 35806247
Alignment:
| Q |
282 |
gcacagaatggatttagagaaataatgaccaggattggcgtaaacacctgctcgctttctactacaggtattaattcctatatctccttatgtacccgcg |
381 |
Q |
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| T |
35806418 |
gcacagaatggatttagagaaataatgaccaggattggcgtaaacacctgctcgctttctactacaggtattaattcctatatctccttatgtacccgcg |
35806319 |
T |
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| Q |
382 |
tgtgtctatttcacatgaactctcagtggctttattccgagggaatcattcttattctttttctctagctct |
453 |
Q |
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| T |
35806318 |
tgtgtctatttcacacgaactctcagtggctttcttccgagggaatcattcttattctttttctctagctct |
35806247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 35806681 - 35806528
Alignment:
| Q |
19 |
gtatcaggtaatctaacagcaaatgaggaactaattttcgataagaaccacatgtaacactgataaggggaattactggcacctaagttttgcaatttgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35806681 |
gtatcaggtaatctaacagcaaatgaggaactaattttcgataagaaccacatgtaacactgataaggggaattactggcacctaagttttgcaatttgt |
35806582 |
T |
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| Q |
119 |
tgttattatatgcatttggtagctgttccacaataatcatttacttgtagttca |
172 |
Q |
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| T |
35806581 |
tgttattatatgcatttggtagctgttccacaataatcatttacttgtagttca |
35806528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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