View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_25 (Length: 457)
Name: NF9557_low_25
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 31016755 - 31016415
Alignment:
| Q |
15 |
tttcgtgtttatccatacaatattgcgctaacaagagaaccaaatttattgatataaaa-----gagggattgattgaagagtttttattttgtttagga |
109 |
Q |
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| T |
31016755 |
tttcatgtttatccatacaatattgcgctaacaagataaccaaatttattgatataaaacatttgagggattgattgaagagtttttattttgtttagga |
31016656 |
T |
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| Q |
110 |
ggatattttttagtgaattggatctttcaaggcttactagagtcgtgataaagtttaagatttagaaaatatatcctaaataatccacaataaaaggtca |
209 |
Q |
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| T |
31016655 |
ggactttttttagtgaattggatctt-caaggcttactagagtcgtgataaagtttaagatttagaaaatatatcctaaataatccacaataaaaggtca |
31016557 |
T |
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| Q |
210 |
ttagacaacagaagttgaattaataaaatacaagtcaattccttgaccnnnnnnnnnnnnntacaagtcaattcatatatttataaataaagcttaactc |
309 |
Q |
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| T |
31016556 |
ttagacaacagaagttgaattaataaaatacaagtcaattccttgacctaaaaaaaaaaaatacaagtcaattcatatatttataaataaagctaaactc |
31016457 |
T |
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| Q |
310 |
atatatttataaaatacgagtttaatcaaccagccactacaa |
351 |
Q |
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| T |
31016456 |
atatatttataaaatacgagtttaatcaacaagctactacaa |
31016415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 31016366 - 31016326
Alignment:
| Q |
401 |
atactaactactctctccaatcatatttataagaaaaagtt |
441 |
Q |
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| T |
31016366 |
atactaactactccctccaatcatatttataagaaaaagtt |
31016326 |
T |
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