View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9557_low_3 (Length: 829)
Name: NF9557_low_3
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 144 - 318
Target Start/End: Complemental strand, 32691303 - 32691129
Alignment:
| Q |
144 |
gaactttgaattttgattgtattgatacggtgttaatttttattgcagacgacaatgggttagagaagaagacttggcaaaggacctcaaattgcatacg |
243 |
Q |
| |
|
|||||||| ||||||||||||||| | | ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32691303 |
gaactttggattttgattgtattggtctgctgttaatttgtattccagaaaacaatgggttagagaagaagacttggcaaaggacctcaaattgaataca |
32691204 |
T |
|
| Q |
244 |
aagcaacttcgtcgaactctgcggttttttgaagaagaaaagattatcactagagatcataggagagaggtaact |
318 |
Q |
| |
|
||| |||||||||||| |||| || |||| ||||||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
32691203 |
aaggaacttcgtcgaaggctgcagtcctttgcagaagaaaagattatcactcgagatcaaaggaaagaggtaact |
32691129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 32692191 - 32692086
Alignment:
| Q |
1 |
gagctttctatgacgatcttaccagcaaaggagataatcagcccaaaactggaagaagtgataacagaggaattgccgtagtagttcttgatgcgctcac |
100 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||| |
|
|
| T |
32692191 |
gagctttctatgatgatcctaccagcaaaggagatgatcagcccaaaactggaagaagtgataacagaggaattgacgtagtcatccttgatgccctcac |
32692092 |
T |
|
| Q |
101 |
caggtg |
106 |
Q |
| |
|
|||||| |
|
|
| T |
32692091 |
caggtg |
32692086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 489 - 616
Target Start/End: Complemental strand, 32690908 - 32690782
Alignment:
| Q |
489 |
gatgtatattagtccataggatgcttactattgattgttgtctgtctactttgtcatgctcttttttccccgccttgtgactcgaaactctaaaatcaag |
588 |
Q |
| |
|
|||||| | ||||| |||| ||||||| ||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||| ||| |||||||| |
|
|
| T |
32690908 |
gatgtacagtagtctatagaatgcttattattgattgttgtttgtcaattccgtcacgctcttttttcct-gccttgtgactagaaaatctgaaatcaag |
32690810 |
T |
|
| Q |
589 |
gacttaaagcctctggtcccatatacac |
616 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32690809 |
gacttaaagcctctggtcccatatacac |
32690782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 6188033 - 6188072
Alignment:
| Q |
749 |
caacgtgaaagctactacgtagtagcttctccaaaatcaa |
788 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
6188033 |
caacgtgaaagctactatgtagtagcatctccaaaatcaa |
6188072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University