View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_30 (Length: 431)
Name: NF9557_low_30
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 2679024 - 2678643
Alignment:
| Q |
19 |
cttatgctgacataaccatttggaactccttgcttgaaaggtgaattcgcaaataatgctgttgataactggtttattaaattgttgtacaaattagttt |
118 |
Q |
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| T |
2679024 |
cttaagctgacataaccatttggaactccttgcttgaaaggtgaattcgcaaataatgcagttgataactggtttattaaattgttgtacaaattagttt |
2678925 |
T |
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| Q |
119 |
gatacaataagaattagaaaagttttagcaacattagaatgaatataaattaaatttctcacaggctgtaaagcgagactggctcgcattttattgatca |
218 |
Q |
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| T |
2678924 |
gatacaataagaattagaaaagttttagcaatattagaatgaatataaattaaatttctcacaggttgtaaagcaagactggctcgcattttattgatca |
2678825 |
T |
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| Q |
219 |
tgtctgcttcagaactgaagtcaaggttgacctagaaccatacataatgtgtactattagtactaattaaatttagatggagtaannnnnnnnnnaaaat |
318 |
Q |
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| T |
2678824 |
tgtctgcttcagaactgaagtcaaggttgacctagaaccatacataatgtgtactattagtac----taaatttagatggagtaatttttttttttaaat |
2678729 |
T |
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| Q |
319 |
attgcaccaaaaaatatataacattctttttatttaactgaagataattaaagggataaatgtgttgtaaataactcacaaaaata |
404 |
Q |
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| T |
2678728 |
attgcaccaaaaaatatataacattctttttatttaactgaagataattaaagggataaatgtgttgtaaataactcacaaaaata |
2678643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 2692610 - 2692384
Alignment:
| Q |
24 |
gctgacataaccatttggaactccttgcttgaaaggtgaattcgcaaataatgctgttgataactggtttattaaattgttgtacaaattag-tttgata |
122 |
Q |
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| T |
2692610 |
gctgacataaccgtttggagctccttgcttgaaaggtgaatttgaaaataaagctgttgctaactggtttatttaattgttgtacaagtaagattagata |
2692511 |
T |
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| Q |
123 |
caataagaattagaaaagttttagcaacattagaat-----gaata----taaattaaatttctcacaggctgtaaagcgagactggctcgcattttatt |
213 |
Q |
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| T |
2692510 |
caataagaatcataaaattttcagtaacataagaataaaacgaacattattaatttaaatttctcaccggctgcaaagctagaccggcgcgcattttctt |
2692411 |
T |
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| Q |
214 |
gatcatgtctgcttcagaactgaagtc |
240 |
Q |
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| T |
2692410 |
gaccatgtctgcttcagaactgaagtc |
2692384 |
T |
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