View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_31 (Length: 429)
Name: NF9557_low_31
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 13398036 - 13397634
Alignment:
| Q |
11 |
caaaggatcaaactatactctctacaaatttattgactctattgttttagggttctcccttgcaacagttgtgatatgcctttgaggtgatcttggtcga |
110 |
Q |
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| T |
13398036 |
caaaggatcaaactatactctctacaaatttattgactctattgttttagggttctcccttgcaacagttgtgatatgcctttgaggtgatcttggtgga |
13397937 |
T |
|
| Q |
111 |
aaagcaaagaaattagaagcttctagaacctctcttccaacagttgctaccacctctgacattctttgtgcacgaagtattgttaggtataatccagcag |
210 |
Q |
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| T |
13397936 |
aaagcaaagaaattagaagcttctagaacctctcttccaacagttgctaccacctctgacattctttgtgcacgaagtattgttaggtataatccagcag |
13397837 |
T |
|
| Q |
211 |
ctaagaaaactgttgttaaagcaaacactccagcagctgagaacaaaccttctctgatggcgtagcaatttgttcttggcttagtccaattgtttaaatg |
310 |
Q |
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| T |
13397836 |
ctatgaaaactgttgttaaagcaaacactccagctgctgagaacaaaccttctctgatggcgtagcaatttgttcttggcttagtccaattttttaaatg |
13397737 |
T |
|
| Q |
311 |
gcctgattctacactaagtcctgccaataacaaaatctccgcaactgcgaaacaaatcctacaatatacaaaaagttatatttaataaattgaacgtgtg |
410 |
Q |
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| T |
13397736 |
gcctgattctacactaagtcctgccaataacaaaatctccgcaactgcgaaacaaatcctacaatatacaaaaagttatatttaataaattgaacgtgtg |
13397637 |
T |
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| Q |
411 |
ttt |
413 |
Q |
| |
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||| |
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| T |
13397636 |
ttt |
13397634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 51 - 384
Target Start/End: Complemental strand, 13394807 - 13394468
Alignment:
| Q |
51 |
attgttttagggttctcccttgcaacagttgtgatatgcctttga------ggtgatcttggtcgaaaagcaaagaaattagaagcttctagaacctctc |
144 |
Q |
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|||||| |||||||||| ||||||||||||| ||||| |||||| |||||||||||| || ||||| | || |||||||||| |||||||||| |
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| T |
13394807 |
attgttgtagggttctctcttgcaacagttgaaatatgtctttgactttgaggtgatcttggtggagaagcataaaaggtagaagcttcaagaacctctc |
13394708 |
T |
|
| Q |
145 |
ttccaacagttgctaccacctctgacattctttgtgcacgaagtattgttaggtataatccagcagctaagaaaactgttgttaaagcaaacactccagc |
244 |
Q |
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||| |||| |||| | | |||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| || |
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| T |
13394707 |
ttctaacaattgcaagctcctcagacattctttgtgcacgaagtgctgttaggtataaaccagcagctaggaaaactgttgttaaagcaaacactcctgc |
13394608 |
T |
|
| Q |
245 |
agctgagaacaaaccttctctgatggcgtagcaatttgttcttggcttagtccaattgtttaaatggcctgattctacactaagtcctgccaataacaaa |
344 |
Q |
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| T |
13394607 |
agctgagaacaaaccttctctgatggtgtagcaatttgttcttggcttagtccaattttttaaatggcctgattctacactaagtcctgccaataacaaa |
13394508 |
T |
|
| Q |
345 |
atctccgcaactgcgaaacaaatcctacaatatacaaaaa |
384 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| ||||| |
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| T |
13394507 |
atctccgcaactgcgaaacaaatcctacaacataaaaaaa |
13394468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 240 - 374
Target Start/End: Original strand, 9058244 - 9058378
Alignment:
| Q |
240 |
ccagcagctgagaacaaaccttctctgatggcgtagcaatttgttcttggcttagtccaattgtttaaatggcctgattctacactaagtcctgccaata |
339 |
Q |
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|||||||||||||||||||||||||||| || ||| || ||||||| | |||| |||||| ||||||||||| ||||||||||||| ||| |||||| |
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| T |
9058244 |
ccagcagctgagaacaaaccttctctgacggtgtatcaggttgttctatgattagaccaattttttaaatggcccgattctacactaatcccttccaata |
9058343 |
T |
|
| Q |
340 |
acaaaatctccgcaactgcgaaacaaatcctacaa |
374 |
Q |
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|||||||||| |||||| ||||||||||||||||| |
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| T |
9058344 |
acaaaatctctgcaactacgaaacaaatcctacaa |
9058378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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