View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_32 (Length: 426)
Name: NF9557_low_32
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 1659498 - 1659087
Alignment:
| Q |
1 |
catattttgaatacaaccctcaatttccaatctcttgaggatatctggactttttgttataaatcttggacccctcaatgtaaagtagtcatcaaagcta |
100 |
Q |
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| T |
1659498 |
catattttgaatacaaccctcaatttccaatctcttgaggatatctggactttttgttataaatcttggacccctcaatgtaaagtagtcatcaaagcta |
1659399 |
T |
|
| Q |
101 |
ttaccattaaccaaaaaatattcaacaacaaaactatccattggcaatctgttatcaaccacatcatctctattgtgtgcagttcacagtaaacaacact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1659398 |
ttaccattaaccaaaaaatattcaacaacaaaactatccattggcaatctgttatcaaccacatcatctctattgtgtgcagttcacaggaaacaacact |
1659299 |
T |
|
| Q |
201 |
agccagaaatctatgacttcatcatcgaagtttaatatctccataaagtcttctagagctcctattatcaaagaggtcatttggcatacacccctagcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1659298 |
agccagaaatctatgacttcatcatcgaagtttaatatctccataaagtcttctagagctcctattatcaaagaggtcatttggcatactcccctagcta |
1659199 |
T |
|
| Q |
301 |
gattgatcaagcgcaacaggaaatggggctgcaactgctgcttct------tcttgttgaggtatttttagaaatcatgaaagccaatttcctctattgt |
394 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1659198 |
gattgatcaagtgcaacaggaaatggggctgcaactgctgcttcttcttcttcttgttgaggtatttttagaaatcatgaaagccaatttcctctattgt |
1659099 |
T |
|
| Q |
395 |
tttgctgagaat |
406 |
Q |
| |
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| T |
1659098 |
tttgctgagaat |
1659087 |
T |
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