View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_low_33 (Length: 422)

Name: NF9557_low_33
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_low_33
NF9557_low_33
[»] chr1 (3 HSPs)
chr1 (159-414)||(3141305-3141565)
chr1 (93-161)||(3140479-3140547)
chr1 (25-77)||(13941381-13941432)
[»] chr5 (1 HSPs)
chr5 (36-77)||(18535987-18536027)
[»] chr4 (1 HSPs)
chr4 (25-69)||(16323853-16323897)
[»] chr3 (1 HSPs)
chr3 (25-77)||(17262281-17262332)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 159 - 414
Target Start/End: Original strand, 3141305 - 3141565
Alignment:
Q  159 tgagagagtgttgtattgcaaaagtgaaagttgaagcactttttctgttgcagtttttgttttctcactattgagcatttatgtcgtcatgagacaaagg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3141305 tgagagagtgttgtattgcaaaagtgaaagttgaagcactttttctgttgcagtttttgttttctcactactgagcatttatgtcgtcatgagacaaagg 3141404  T
Q  259 taaaatatcaaatcacatggtacta-----tgtaggacacagtagagaataaaaataggtagaaggagaaaaatgtctaagaaaatatggcgtgtttatc 353  Q
    |||||||||| ||||||||||||||     ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  3141405 taaaatatcacatcacatggtactagtagatgtaggacacagtagagaataaaaataggtagggggagaaaaatgtctaagaaaatatggcgtgtttatc 3141504  T
Q  354 tcagcatgagcatgaaggatgaacataacatggatgaaagctcataaagaacctctctgct 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3141505 tcagcatgagcatgaaggatgaacataacatggatgaaagctcataaagaacctctgtgct 3141565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 3140479 - 3140547
Alignment:
Q  93 tagacatttgattctttaattaatttttaagttttggtcccttaataccatctccttcatcgcatttga 161  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  3140479 tagacatttgattctttaattaatttttaagttttggtgccttaataccatctccttcatcccatttga 3140547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 13941381 - 13941432
Alignment:
Q  25 cggacatcccgcttattcaccttgcaaaaaagtgaattctaaccattaaacta 77  Q
    |||||| ||| |||||||| |||| |||||||||||||||||||| |||||||    
T  13941381 cggacaccccacttattcatcttg-aaaaaagtgaattctaaccactaaacta 13941432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 18535987 - 18536027
Alignment:
Q  36 cttattcaccttgcaaaaaagtgaattctaaccattaaacta 77  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  18535987 cttattcaccttg-aaaaaagtgaattctaaccactaaacta 18536027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 16323897 - 16323853
Alignment:
Q  25 cggacatcccgcttattcaccttgcaaaaaagtgaattctaacca 69  Q
    |||||||||| ||||||||| ||  ||||||||||||||||||||    
T  16323897 cggacatcccacttattcactttaaaaaaaagtgaattctaacca 16323853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 17262281 - 17262332
Alignment:
Q  25 cggacatcccgcttattcaccttgcaaaaaagtgaattctaaccattaaacta 77  Q
    |||||| ||| ||||||||||||| ||||| ||||||||||| ||||||||||    
T  17262281 cggacaccccacttattcaccttg-aaaaaggtgaattctaatcattaaacta 17262332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University