View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_low_38 (Length: 404)

Name: NF9557_low_38
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_low_38
NF9557_low_38
[»] chr1 (5 HSPs)
chr1 (80-393)||(25427259-25427572)
chr1 (1-75)||(25425790-25425864)
chr1 (240-373)||(17622129-17622261)
chr1 (239-290)||(35395020-35395071)
chr1 (241-290)||(16976158-16976207)
[»] chr7 (2 HSPs)
chr7 (80-156)||(27223857-27223933)
chr7 (1-63)||(12864659-12864721)
[»] chr8 (1 HSPs)
chr8 (5-48)||(11221797-11221840)
[»] chr6 (4 HSPs)
chr6 (239-308)||(18603176-18603245)
chr6 (8-53)||(24321997-24322042)
chr6 (243-295)||(23905901-23905953)
chr6 (7-51)||(24320081-24320125)
[»] chr4 (3 HSPs)
chr4 (2-67)||(17263964-17264029)
chr4 (5-53)||(20869501-20869549)
chr4 (5-41)||(13209089-13209125)
[»] chr5 (1 HSPs)
chr5 (5-53)||(19762181-19762229)
[»] chr2 (2 HSPs)
chr2 (7-50)||(13516955-13516998)
chr2 (9-46)||(34151311-34151348)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 80 - 393
Target Start/End: Original strand, 25427259 - 25427572
Alignment:
Q  80 atttgatgtagagatgcatctttcctttccaaaagttgtagtttagcgcattgaagaaatgtggtcttaattgagaatttccttctttactgaagcctgt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25427259 atttgatgtagagatgcatctttcctttccaaaagttgtagtttagcgcattgtagaaatgtggtcttaattgagaatttccttctttactgaagcctgt 25427358  T
Q  180 tgatggaattttttaatcaaccatatttacttcttcctgaacctttcctctaataaaatcttgcttttgaactatcaaataaaggagttaaaggataaac 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  25427359 tgatggaattttttaatcaaccatatttacttcttcctgaacctttcctctaataaaatcttgcttttgaactatcaaataaaggagttaagggatagac 25427458  T
Q  280 aagatgacacagataaatttatcctatttcatccaactcggctagtccagtctccactgactttgagatttttcaatctggtgcttgagataccttatca 379  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25427459 aagatgacacggataaatttatcctatttcatccaactgggctagtccagtctccactgactttgagatttttcaatctggtgcttgagataccttatca 25427558  T
Q  380 tagtatgccccttt 393  Q
    ||||||||||||||    
T  25427559 tagtatgccccttt 25427572  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 25425790 - 25425864
Alignment:
Q  1 tagcgcttgccttcctcttgaactgccaagttctgaatgaaaatttgtgaatgtgaaatcttgtattaataagca 75  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25425790 tagcgcttgccttcctcttgaaccgccaagttctgaatgaaaatttgtgaatgtgaaatcttgtattaataagca 25425864  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 373
Target Start/End: Complemental strand, 17622261 - 17622129
Alignment:
Q  240 ttgcttttgaactatcaaataaaggagttaaaggataaacaagatgacacagataaatttatcctatttcatccaactcggctagtccagtctccactga 339  Q
    |||||| ||||||||| |||||| |||||||  | || | ||||||||||| | ||  ||||| || |||| | |||| ||||||||||||| ||||| |    
T  17622261 ttgcttctgaactatcgaataaaagagttaagaggtagagaagatgacacaaacaa--ttatcatagttcacctaactaggctagtccagtccccactaa 17622164  T
Q  340 ctttgagattttt-caatctggtgcttgagatacc 373  Q
    || || ||||||| ||||||||||| |||||||||    
T  17622163 ctgtgcgattttttcaatctggtgcatgagatacc 17622129  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 35395020 - 35395071
Alignment:
Q  239 cttgcttttgaactatcaaataaaggagttaaaggataaacaagatgacaca 290  Q
    ||||| |||||||||||||||||||||||||| || |||| |||||||||||    
T  35395020 cttgcatttgaactatcaaataaaggagttaaggggtaaagaagatgacaca 35395071  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 16976207 - 16976158
Alignment:
Q  241 tgcttttgaactatcaaataaaggagttaaaggataaacaagatgacaca 290  Q
    |||||||||||||||||||||| |||||||  |||| | |||||||||||    
T  16976207 tgcttttgaactatcaaataaaagagttaagagatagagaagatgacaca 16976158  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 27223933 - 27223857
Alignment:
Q  80 atttgatgtagagatgcatctttcctttccaaaagttgtagtttagcgcattgaagaaatgtggtcttaattgagaa 156  Q
    ||||||||||||| ||||  ||||||||| ||||| | || |||| | |||||||||||||||||||| ||||||||    
T  27223933 atttgatgtagagttgcacatttcctttctaaaagctatattttaacccattgaagaaatgtggtcttgattgagaa 27223857  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12864659 - 12864721
Alignment:
Q  1 tagcgcttgccttcctcttgaactgccaagttctgaatgaaaatttgtgaatgtgaaatcttg 63  Q
    ||||||||| ||||| ||||||||||| |||||| |||||| ||||||||||| ||| |||||    
T  12864659 tagcgcttgacttccacttgaactgcctagttctaaatgaacatttgtgaatgagaactcttg 12864721  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 11221797 - 11221840
Alignment:
Q  5 gcttgccttcctcttgaactgccaagttctgaatgaaaatttgt 48  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||    
T  11221797 gcttgccttcctcttgaactgtcaagttctgaatgaatatttgt 11221840  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 18603176 - 18603245
Alignment:
Q  239 cttgcttttgaactatcaaataaaggagttaaaggataaacaagatgacacagataaatttatcctattt 308  Q
    ||||||| |||||||||||||||| ||||||| ||||||| ||||||||| | |  || |||||||||||    
T  18603176 cttgcttctgaactatcaaataaatgagttaagggataaagaagatgacataaaagaagttatcctattt 18603245  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 24322042 - 24321997
Alignment:
Q  8 tgccttcctcttgaactgccaagttctgaatgaaaatttgtgaatg 53  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||    
T  24322042 tgccttcttcttgaaccgccaagttctgaatgaatatttgtgaatg 24321997  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 23905953 - 23905901
Alignment:
Q  243 cttttgaactatcaaataaaggagttaaaggataaacaagatgacacagataa 295  Q
    |||||||||||||||| ||||||||||| ||||| |  |||||||||| ||||    
T  23905953 cttttgaactatcaaacaaaggagttaagggatagagtagatgacacaaataa 23905901  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 24320081 - 24320125
Alignment:
Q  7 ttgccttcctcttgaactgccaagttctgaatgaaaatttgtgaa 51  Q
    |||||||| |||||||||| ||||||||||||||| | |||||||    
T  24320081 ttgccttcttcttgaactgacaagttctgaatgaataattgtgaa 24320125  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 17263964 - 17264029
Alignment:
Q  2 agcgcttgccttcctcttgaactgccaagttctgaatgaaaatttgtgaatgtgaaatcttgtatt 67  Q
    |||||||||||||| ||||||| ||||| |||||||||| || ||||||||| |||  ||||||||    
T  17263964 agcgcttgccttccacttgaaccgccaaattctgaatgagaaattgtgaatgagaacccttgtatt 17264029  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 20869549 - 20869501
Alignment:
Q  5 gcttgccttcctcttgaactgccaagttctgaatgaaaatttgtgaatg 53  Q
    ||||||||||||||| ||||| |||||| |||||||| |||||||||||    
T  20869549 gcttgccttcctcttaaactgtcaagttttgaatgaatatttgtgaatg 20869501  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 13209125 - 13209089
Alignment:
Q  5 gcttgccttcctcttgaactgccaagttctgaatgaa 41  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  13209125 gcttgtcttcctcttgaaccgccaagttctgaatgaa 13209089  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 19762229 - 19762181
Alignment:
Q  5 gcttgccttcctcttgaactgccaagttctgaatgaaaatttgtgaatg 53  Q
    ||||||||||||||||||||||   ||||||||||| ||||||||||||    
T  19762229 gcttgccttcctcttgaactgcttcgttctgaatgagaatttgtgaatg 19762181  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 13516998 - 13516955
Alignment:
Q  7 ttgccttcctcttgaactgccaagttctgaatgaaaatttgtga 50  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||    
T  13516998 ttgccttcctcttgaactgtcaagttctggatgacaatttgtga 13516955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 34151348 - 34151311
Alignment:
Q  9 gccttcctcttgaactgccaagttctgaatgaaaattt 46  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  34151348 gccttcctcttgaactgccaaattctgaatgaacattt 34151311  T

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