View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_4 (Length: 744)
Name: NF9557_low_4
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 460 - 744
Target Start/End: Complemental strand, 49979042 - 49978758
Alignment:
| Q |
460 |
ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggat |
559 |
Q |
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| T |
49979042 |
ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggat |
49978943 |
T |
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| Q |
560 |
gatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatg |
659 |
Q |
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| T |
49978942 |
gatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatg |
49978843 |
T |
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| Q |
660 |
actcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaact |
744 |
Q |
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| T |
49978842 |
actcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaact |
49978758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 223 - 446
Target Start/End: Complemental strand, 49979290 - 49979068
Alignment:
| Q |
223 |
gaagtgacacaaactttcagttcatatccaacagcttgtttgttgttgtaccgaaccaacatataaaagacattcccacagctagaatccaaagtagctg |
322 |
Q |
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| T |
49979290 |
gaagtgacacaaactttcagttcatatccaacagcttgtttgttgttgtaccgaaccaacatataaaagacattcc-acagctagaatccaaagtagctg |
49979192 |
T |
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| Q |
323 |
aggttgtgaatgatctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagca |
422 |
Q |
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| T |
49979191 |
aggttgtgaatgagctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagca |
49979092 |
T |
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| Q |
423 |
ccttaattaattatgaatcatcta |
446 |
Q |
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| T |
49979091 |
ccttaattaattatgaatcatcta |
49979068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 49979494 - 49979374
Alignment:
| Q |
19 |
atattaccttaattgtgcaagcatagtgtgacactgacatgatgagcatatcaagaaactagaatattctaattttggtttgactagagagagtgagagg |
118 |
Q |
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| T |
49979494 |
atattaccttaattgtgcaagcatagtgtgacactgacatgatgagcatatcaagaaactagaatattctaattttggtttgactagagagagtgagagg |
49979395 |
T |
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| Q |
119 |
tagatttttggatttttagtt |
139 |
Q |
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| T |
49979394 |
tagatttttggatttttagtt |
49979374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 570 - 626
Target Start/End: Original strand, 49952122 - 49952178
Alignment:
| Q |
570 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
626 |
Q |
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| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
49952178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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