View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_40 (Length: 400)
Name: NF9557_low_40
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 10090102 - 10090489
Alignment:
| Q |
1 |
taggatagttcaaataatgcaattcatccaaccaattccggtgaaaatagtcttacatttagatataaaa-aatgctaccattgcatttttctatctcaa |
99 |
Q |
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| T |
10090102 |
taggatagttcaaaaaatgtaattcatccaaccaatttcagtgaaaatagtcttacatttagatataaaaaaatgctaccaatgcatttttctatctcaa |
10090201 |
T |
|
| Q |
100 |
gaatgtaaactctatttttgtccagaaagtagctgaaggaatttcatcgctttgaacctaatataatctgtaaatattgattcatatcttccccataaga |
199 |
Q |
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| T |
10090202 |
aaatgtaaactctatttttgtccagaaagtagctgaaggaatttcatcgctttgaacctaatataacctgtaaatattgattcatatcttccccataaga |
10090301 |
T |
|
| Q |
200 |
gctaggtaacttccaagatctagataatgagatattgtttaagagtgtatgaatgtttatgagcattttaatgnnnnnnnacagtgtttctttggatatt |
299 |
Q |
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| T |
10090302 |
gctaggtaacttccaagatctagataatgagatattgtttaagagtgtatgaatgtttgtgagcattttaatgtttttttagagtgtttctttggatgtt |
10090401 |
T |
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| Q |
300 |
tgagaggaaaaataatggagttaaaattagagagaagggatatgaaatgaaatgcaaagaagacaggaggaatgaatgaagggaaaat |
387 |
Q |
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| T |
10090402 |
tgagaggaaaaataatggagttaaaattagagagaagggatatgaaatgaaatgcaaagaaaacaggaggaatgaatgaagggaaaat |
10090489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 139 - 385
Target Start/End: Original strand, 10103697 - 10103945
Alignment:
| Q |
139 |
aatttcatcgctttgaacctaatataatctgta-aatattgattcatatcttccccataagagctaggtaacttccaagatctagataatgagatattgt |
237 |
Q |
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| T |
10103697 |
aatttcatcgctttgaac-taatataatctatacaatattaattcatctcttccccataagagctacgtaacttccaagatctagctaatgagatattgt |
10103795 |
T |
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| Q |
238 |
ttaagagtgtatgaatgtttatgagcattttaatg--nnnnnnnacagtgtttctttggatatttgagaggaaaaataatggagttaaaattagagagaa |
335 |
Q |
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||||||||||||| ||||||||| ||| | | || | |||||||||||||||||||||||| ||||||| | ||||||||||||||||||| |
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| T |
10103796 |
ctaagagtgtatgagtgtttatgatcatctgactgttttttttaagagtgtttctttggatatttgagagaaaaaatattagagttaaaattagagagaa |
10103895 |
T |
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| Q |
336 |
gggatatgaaatgaaatgcaaagaagacaggaggaatgaatgaagggaaa |
385 |
Q |
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| T |
10103896 |
gggatatgaaatgaaaagcaaagaagagaggaggaatgaatgaatggaaa |
10103945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 268
Target Start/End: Original strand, 10079579 - 10079714
Alignment:
| Q |
134 |
gaaggaatttcatcgctttgaacctaatataatctgtaa--atattgattcatatcttccccataagagctaggtaacttccaagatctagataatgaga |
231 |
Q |
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|||||||||||||||| |||||| ||||||||||| | | |||| |||||| |||| |||||||||| ||||| ||||| |||||||||| || | || |
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| T |
10079579 |
gaaggaatttcatcgcattgaac-taatataatctattacaatataaattcatctctttcccataagagttaggtgacttctaagatctagagaacggga |
10079677 |
T |
|
| Q |
232 |
tattgtttaagagtgtatgaatgtttatgagcatttt |
268 |
Q |
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|||||| ||||||||||| |||||||||||||||| |
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| T |
10079678 |
acttgtttgagagtgtatgagtgtttatgagcatttt |
10079714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 10096278 - 10096367
Alignment:
| Q |
179 |
attcatatcttccccataagagctaggtaacttccaagatctagataatgagatattgtttaagagtgtatgaatgtttatgagcatttt |
268 |
Q |
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|||||| |||| ||||||||| |||| | ||||| |||||||||| ||||||| |||||| ||||||||||| ||||||||||||||| |
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| T |
10096278 |
attcatctctttcccataagaactagatgacttctaagatctagagaatgagaacttgtttgagagtgtatgagggtttatgagcatttt |
10096367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 10072252 - 10072304
Alignment:
| Q |
171 |
aaatattgattcatatcttccccataagagctaggtaacttccaagatctaga |
223 |
Q |
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||||||| |||||| |||| | |||||||||||||||| |||| ||||||||| |
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| T |
10072252 |
aaatattaattcatgtctttctcataagagctaggtaaattccgagatctaga |
10072304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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