View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_low_42 (Length: 398)

Name: NF9557_low_42
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_low_42
NF9557_low_42
[»] chr2 (6 HSPs)
chr2 (16-195)||(13016919-13017098)
chr2 (193-381)||(13015926-13016118)
chr2 (44-283)||(11272399-11272637)
chr2 (31-274)||(1479434-1479676)
chr2 (47-117)||(15316524-15316594)
chr2 (54-125)||(30995318-30995389)
[»] chr6 (5 HSPs)
chr6 (33-270)||(1034156-1034394)
chr6 (39-235)||(2920962-2921158)
chr6 (145-235)||(18246572-18246662)
chr6 (207-274)||(32548941-32549008)
chr6 (49-83)||(8407533-8407567)
[»] chr8 (7 HSPs)
chr8 (16-244)||(8273676-8273904)
chr8 (16-283)||(9936236-9936506)
chr8 (55-261)||(37269843-37270048)
chr8 (55-261)||(42941119-42941325)
chr8 (47-245)||(30503004-30503202)
chr8 (159-261)||(36404064-36404166)
chr8 (59-118)||(37484904-37484963)
[»] chr1 (3 HSPs)
chr1 (79-264)||(32774124-32774309)
chr1 (54-118)||(19586677-19586741)
chr1 (46-118)||(24722559-24722631)
[»] chr7 (2 HSPs)
chr7 (47-269)||(42460093-42460315)
chr7 (145-235)||(31234771-31234861)
[»] chr5 (1 HSPs)
chr5 (16-244)||(36988869-36989097)
[»] chr4 (7 HSPs)
chr4 (38-261)||(2282104-2282328)
chr4 (145-235)||(16989575-16989665)
chr4 (47-121)||(4913493-4913567)
chr4 (47-121)||(43441460-43441534)
chr4 (47-121)||(22904704-22904778)
chr4 (47-121)||(22956372-22956446)
chr4 (183-244)||(4913370-4913431)
[»] chr3 (4 HSPs)
chr3 (183-283)||(53553627-53553728)
chr3 (145-235)||(1259319-1259409)
chr3 (145-235)||(37242607-37242697)
chr3 (47-118)||(51042152-51042223)
[»] scaffold0760 (1 HSPs)
scaffold0760 (168-261)||(1722-1815)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 13017098 - 13016919
Alignment:
Q  16 ggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13017098 ggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcgacaatttggtcgatttggatggaaagaaatgctaggatttt 13016999  T
Q  116 taagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13016998 taagaacaaagtgaaggaagtagaggaactagtggatgagataaaagtggtttcttgggtttggacgttgagtagattaa 13016919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 193 - 381
Target Start/End: Complemental strand, 13016118 - 13015926
Alignment:
Q  193 taaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgtttttggatctgcttaa----gg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    ||    
T  13016118 taaagataacctcttttctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaatggtgctgtttttggatctgcttaattaagg 13016019  T
Q  289 ggtttgtgttgatctcgggcccctctgtggttggtgcagcttgttttgatcgtttcggttttaggatgggcctgtttgtatagattctttggg 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13016018 ggtttgtgttgatctcgggcccctctgtggttggtgcagcttgttttgatcgtttcggttttaggatgggtctgtttgtatagattctttggg 13015926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 44 - 283
Target Start/End: Original strand, 11272399 - 11272637
Alignment:
Q  44 taagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa-caaagtgaaggaagtagagga 142  Q
    |||||| || ||||||||||||||||||||||||||||||| |||||| | | |||||||||| |||||||| || || |||||  |||||||| |||||    
T  11272399 taagaaggggttttggttgatttggcatgcaacaatttggttgatttgaaag-aaagaaatgcaaggattttcaataatcaaaga-aaggaagtggagga 11272496  T
Q  143 actagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagag 242  Q
    | | ||| |||| || |||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||| |||||||| ||||||| ||| ||||||    
T  11272497 aattgtgaatgaaatcaaagcggtttcttgggtttggacgttgagtaggttaaagatagcttctttcctcttctatgagtgaacttggattcctagagag 11272596  T
Q  243 tgctttaatagaagatgaatggtgctgtttttggatctgct 283  Q
    |||   ||||||||||||| |  ||||||||||||||||||    
T  11272597 tgcccaaatagaagatgaacgacgctgtttttggatctgct 11272637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 274
Target Start/End: Complemental strand, 1479676 - 1479434
Alignment:
Q  31 tctctaaaaggcataagaaaggtttttg-gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtga 129  Q
    |||||||||| || | |||||||||||  ||||||||||  ||| || ||||||| || ||||| |||||||||||| |||||||| |  ||||||| ||    
T  1479676 tctctaaaagacaaaggaaaggtttttttgttgatttggtgtgccaccatttggttgacttggaaggaaagaaatgcaaggattttcaccaacaaagaga 1479577  T
Q  130 aggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttg 229  Q
    |||| || || ||  |||| || ||||| ||||||||||| |||| ||||||| ||||||||||||||||| | || || ||||||||||||||||||||    
T  1479576 aggaggtggaagaggtagttgacgagatcaaagcggtttcgtgggattggacgctgagtagattaaagatagcatcgttcctcttttatgagtggacttg 1479477  T
Q  230 gaatccgagagagtgctttaatagaagatgaatggtgctgttttt 274  Q
    ||||||   ||||||| | |||| ||||||||  |||||||||||    
T  1479476 gaatcc--tagagtgcctaaataaaagatgaaatgtgctgttttt 1479434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 15316524 - 15316594
Alignment:
Q  47 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggattttta 117  Q
    ||||||||||| |||||||||||| ||  ||||||||  |||||||| |||||| ||||| ||||||||||    
T  15316524 gaaaggtttttagttgatttggcacgcggcaatttggatgatttggagggaaaggaatgcgaggattttta 15316594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 30995318 - 30995389
Alignment:
Q  54 ttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaa 125  Q
    ||||||||||||||||| ||| | ||||||  |||||||| ||| || |||||| |||||||||| ||||||    
T  30995318 ttttggttgatttggcacgcatctatttggatgatttggaaggagaggaatgctcggatttttaaaaacaaa 30995389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 33 - 270
Target Start/End: Original strand, 1034156 - 1034394
Alignment:
Q  33 tctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaagg 132  Q
    ||||| || ||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||||||||| ||||||||||| ||||||| |||||    
T  1034156 tctaagagacataagaaaggtttttggttgatttggcacgcgacaatttggttgatttggaaggaaagaaatgcaaggatttttaataacaaagcgaagg 1034255  T
Q  133 aagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaa 232  Q
    | || |  ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||||||||||||    
T  1034256 aggttggtgagatagtggatgagattaaagcggtttcttgggtttggacgttgagtagattaaagatagcatcgttcctcttttatgagtggacttggaa 1034355  T
Q  233 tccgagagagtgctttaata-gaagatgaatggtgctgt 270  Q
    ||| | ||||||| | |||| | ||||||| ||||||||    
T  1034356 tcctaaagagtgcctaaatagggagatgaaaggtgctgt 1034394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 2921158 - 2920962
Alignment:
Q  39 aggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtag 138  Q
    ||||||||||| | ||||||||||||||||||  | || |||||||||||||||| ||||||||| || ||||| || || ||| ||  |||||| || |    
T  2921158 aggcataagaaggatttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtgg 2921059  T
Q  139 aggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 235  Q
    ||||| | ||||| || || |||||  ||||||||||||||| ||||||||| ||||||||| | ||||| ||||||||||||||||| ||||||||    
T  2921058 aggaaattgtggacgatattaaagcactttcttgggtttggatgttgagtaggttaaagatagcttctttcctcttttatgagtggacatggaatcc 2920962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 18246662 - 18246572
Alignment:
Q  145 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 235  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  18246662 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 18246572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 32548941 - 32549008
Alignment:
Q  207 tttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgttttt 274  Q
    |||||||||||| ||||||||| |||||| ||| | ||  | ||||||||||||| ||||||||||||    
T  32548941 tttctcttttataagtggacttagaatcctagataatgtctaaatagaagatgaagggtgctgttttt 32549008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 8407533 - 8407567
Alignment:
Q  49 aaggtttttggttgatttggcatgcaacaatttgg 83  Q
    |||||||||||||||||||||| ||||||||||||    
T  8407533 aaggtttttggttgatttggcacgcaacaatttgg 8407567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 8273676 - 8273904
Alignment:
Q  16 ggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttt 115  Q
    |||||||||| || | ||| ||||||| ||| || || |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||    
T  8273676 ggaatagtgaggttccctccaaaaggcttaaaaaggggttttggttgatttggcatgcgacaatttggtcgatttggaaggaaagaaatgcaaggatttt 8273775  T
Q  116 taagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttt 215  Q
    ||| ||  || |||| ||||| |||||  ||||||||||||| || |||||||||||||||||||||  |||||||||||||||| | ||||| ||||||    
T  8273776 taacaatcaaatgaaagaagtggaggagttagtggatgagattaaggcggtttcttgggtttggacgacgagtagattaaagatagcttctttcctcttt 8273875  T
Q  216 tatgagtggacttggaatccgagagagtg 244  Q
    |||||||||| ||||||||| ||||||||    
T  8273876 tatgagtggatttggaatcctagagagtg 8273904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 9936236 - 9936506
Alignment:
Q  16 ggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttt 115  Q
    |||||| ||| ||| |||| | ||||| || ||||||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||  |||||||    
T  9936236 ggaataatgaggtggtctcgagaaggcttaggaaaggttttttgttgatttggcatgccactatttggttgatttggatggaaagaaatgcacggatttt 9936335  T
Q  116 taagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttt 215  Q
     ||  |||||| |||||| || | |||  |||||||||||||  ||||||| |||||||| |||| |||||| ||| |||||||| | || || ||||||    
T  9936336 caatcacaaagagaaggatgttggggagttagtggatgagattgaagcggtgtcttgggtgtggatgttgagcagactaaagatagcatcgttcctcttt 9936435  T
Q  216 tatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctg---tttttggatctgct 283  Q
    ||||||||||||||||| || ||| ||||| | ||||||||||||| |||||||   ||||||||||||||    
T  9936436 tatgagtggacttggaaccctagacagtgcctaaatagaagatgaaaggtgctggcttttttggatctgct 9936506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 261
Target Start/End: Complemental strand, 37270048 - 37269843
Alignment:
Q  55 tttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatga 154  Q
    ||||| ||||||||||||||||||||||| ||||||||| || ||||||||| ||||||||||||||  ||| |||||| || || ||  | ||||| ||    
T  37270048 tttggatgatttggcatgcaacaatttggacgatttggaagg-aagaaatgcgaggatttttaagaatcaagcgaaggatgtggatgagattgtggagga 37269950  T
Q  155 gataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaataga 254  Q
     || ||||   | |||||| |||||  |||||||||| | |||||| | || || |||||||||||||||||||||||||| ||||| ||  ||||||||    
T  37269949 aatcaaagttatatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaataga 37269850  T
Q  255 agatgaa 261  Q
    |||||||    
T  37269849 agatgaa 37269843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 55 - 261
Target Start/End: Original strand, 42941119 - 42941325
Alignment:
Q  55 tttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatga 154  Q
    ||||| ||||||| ||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||  ||| |||||| || || ||  | ||||| ||    
T  42941119 tttggatgatttgacatgcaacaatttggacgatttggaaggaaaaaaatgcgaggatttttaagaatcaagcgaaggatgtggatgagattgtggagga 42941218  T
Q  155 gataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaataga 254  Q
     || ||||   | |||||| || ||  |||||||||| |||||||| | || || |||||||||||||||||||||||||| ||||| ||   |||||||    
T  42941219 aatcaaagttttatcttggtttggggtgttgagtagactaaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcgtaataga 42941318  T
Q  255 agatgaa 261  Q
    |||||||    
T  42941319 agatgaa 42941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 30503202 - 30503004
Alignment:
Q  47 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaacta 146  Q
    ||||| ||||||||||||||| |||||||| ||||||  |||||||| |||||| ||||| ||||| ||||||||| || | ||  |  | || ||  ||    
T  30503202 gaaagctttttggttgatttgacatgcaactatttggatgatttggaaggaaaggaatgcgaggatctttaagaaccaattcaaaaacttcgatgagata 30503103  T
Q  147 gtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgc 245  Q
    ||||| || || ||||||   ||||||  |||| ||||||||||||| | |||| | ||||  ||||| || ||||||  |||||||||||||||||||    
T  30503102 gtggaagacattaaagcgacatcttggtgttggtcgttgagtagattgaggatagcttcttacctcttctacgagtggtgttggaatccgagagagtgc 30503004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 36404166 - 36404064
Alignment:
Q  159 aaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagat 258  Q
    |||| ||| |||||| ||||| ||||||||||| | |||||| | || || ||||| || ||||||||||||||||| ||||| || || ||||||||||    
T  36404166 aaagtggtatcttggttttgggcgttgagtagacttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatgtttaaatagaagat 36404067  T
Q  259 gaa 261  Q
    |||    
T  36404066 gaa 36404064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 37484963 - 37484904
Alignment:
Q  59 gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 118  Q
    ||||||||||||||   | |||||||| ||||||| |||||| |||||||||||||||||    
T  37484963 gttgatttggcatgtggcgatttggtcaatttggaaggaaaggaatgctaggatttttaa 37484904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 79 - 264
Target Start/End: Complemental strand, 32774309 - 32774124
Alignment:
Q  79 tttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttg 178  Q
    |||||| |||||||| |||||||||||| ||||| || || ||| ||  |||||| || |||||  ||||||||||||| ||||||||||||||||||||    
T  32774309 tttggttgatttggaaggaaagaaatgcaaggatcttcaacaaccaaacgaaggaggttgaggatttagtggatgagatcaaagcggtttcttgggtttg 32774210  T
Q  179 gacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatgg 264  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  32774209 gacgttgagtagattaaagatagcctcattcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaatgg 32774124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 19586741 - 19586677
Alignment:
Q  54 ttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 118  Q
    ||||||||| ||||||| ||||| ||||||| |||||||| |||||||||||| ||||| |||||    
T  19586741 ttttggttggtttggcacgcaacgatttggttgatttggaaggaaagaaatgcaaggatctttaa 19586677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 24722559 - 24722631
Alignment:
Q  46 agaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 118  Q
    |||||| ||||  |||| |||||||||| || ||||||  |||||||| |||||||||| | |||||||||||    
T  24722559 agaaagcttttatgttggtttggcatgccactatttggatgatttggaaggaaagaaattcgaggatttttaa 24722631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 47 - 269
Target Start/End: Complemental strand, 42460315 - 42460093
Alignment:
Q  47 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaacta 146  Q
    ||||||||||| ||||||||||||||| || ||||||| |||||||| ||||||||||||  ||||||| ||  | |||| |||||| || | |||  ||    
T  42460315 gaaaggttttttgttgatttggcatgccactatttggttgatttggaaggaaagaaatgcccggattttcaatcaaaaagagaaggatgttggggagtta 42460216  T
Q  147 gtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgct 246  Q
    ||||||||||| |||||||| |||||||| ||||   |||| ||  |||||||| | || || ||||||||||||| |||||||||||| |||||||||     
T  42460215 gtggatgagattaaagcggtgtcttgggtgtggatactgagcaggctaaagatagcatcgttcctcttttatgagtagacttggaatcctagagagtgcc 42460116  T
Q  247 ttaatagaagatgaatggtgctg 269  Q
    | ||||||||||||| |||||||    
T  42460115 taaatagaagatgaaaggtgctg 42460093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 31234861 - 31234771
Alignment:
Q  145 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 235  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||||||||||||    
T  31234861 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacttggaatcc 31234771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 36988869 - 36989097
Alignment:
Q  16 ggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttt 115  Q
    |||||||||||||| |  | || |||| ||| ||||| |||||||||||||||||||| || ||||||| |||||||| |||||||||||| ||||||||    
T  36988869 ggaatagtgaagtgatgccgaagaggcttaataaagggttttggttgatttggcatgctactatttggttgatttggaaggaaagaaatgcgaggatttt 36988968  T
Q  116 taagaa-caaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctctt 214  Q
    ||| || | ||| |||| | || |||||| ||||| | || || |||||||||||||||||||||  ||||||||| || |||||| | ||||| |||||    
T  36988969 taataatctaag-gaagaatgtggaggaaatagtgaacgaaatcaaagcggtttcttgggtttggttgttgagtaggttgaagatagcttctttcctctt 36989067  T
Q  215 ttatgagtggacttggaatccgagagagtg 244  Q
     ||| ||||||| |||||||| ||||||||    
T  36989068 ctataagtggacgtggaatcctagagagtg 36989097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 261
Target Start/End: Original strand, 2282104 - 2282328
Alignment:
Q  38 aaggcataagaaaggtttttg-gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagt 136  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||||||  |||||||  ||||| ||||  |||||||| || || ||||||||||  ||    
T  2282104 aaggcataggaaaggtttttttgttgatttggcatgtcacaatttggttaatttggaaagaaagcaatgaaaggattttcaacaataaagtgaagggtgt 2282203  T
Q  137 agaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccg 236  Q
     ||  |  ||||||||||||| ||||||||||||||||| ||| | |||||||||||||||| | | || || ||||| ||||| ||||||| ||| ||     
T  2282204 tgataatttagtggatgagattaaagcggtttcttgggtgtggtcattgagtagattaaagaaagcatcgttcctcttctatgaatggacttagaaccct 2282303  T
Q  237 agagagtgctttaatagaagatgaa 261  Q
    || || ||| | |||||||||||||    
T  2282304 agggaatgcctaaatagaagatgaa 2282328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 16989575 - 16989665
Alignment:
Q  145 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 235  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  16989575 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 16989665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 4913567 - 4913493
Alignment:
Q  47 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 121  Q
    ||||| ||||| | |||||||||||||  ||||||||  |||||||| |||||||||||| ||||||||||||||    
T  4913567 gaaagcttttttgatgatttggcatgcctcaatttggatgatttggaaggaaagaaatgcgaggatttttaagaa 4913493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 43441534 - 43441460
Alignment:
Q  47 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 121  Q
    ||||| ||||| | |||||||||||||  ||||||||  |||||||| ||||||||| || ||||||||||||||    
T  43441534 gaaagcttttttgatgatttggcatgcctcaatttggatgatttggaaggaaagaaacgcgaggatttttaagaa 43441460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 22904778 - 22904704
Alignment:
Q  47 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 121  Q
    ||||| ||||| | ||||||| |||||  | ||||||  |||||||||||||||||| || ||||||||||||||    
T  22904778 gaaagcttttttgatgatttgacatgcctctatttggatgatttggatggaaagaaacgcgaggatttttaagaa 22904704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 22956446 - 22956372
Alignment:
Q  47 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 121  Q
    ||||| ||||| | ||||||| |||||  | ||||||  |||||||||||||||||| || ||||||||||||||    
T  22956446 gaaagcttttttgatgatttgacatgcctctatttggatgatttggatggaaagaaacgcgaggatttttaagaa 22956372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 4913431 - 4913370
Alignment:
Q  183 ttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtg 244  Q
    ||||||||||| | |||| | |||| ||||||||| ||||||  ||||||||||||||||||    
T  4913431 ttgagtagattgaggatagcttcttgtctcttttacgagtggtgttggaatccgagagagtg 4913370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 283
Target Start/End: Complemental strand, 53553728 - 53553627
Alignment:
Q  183 ttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctg-tttttggatctg 281  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||| | ||||| ||||||| || |||| ||||||||||||    
T  53553728 ttgagtagattaaagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgttttttggatctg 53553629  T
Q  282 ct 283  Q
    ||    
T  53553628 ct 53553627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 1259409 - 1259319
Alignment:
Q  145 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 235  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  1259409 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 1259319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 37242697 - 37242607
Alignment:
Q  145 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 235  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  37242697 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 37242607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 51042152 - 51042223
Alignment:
Q  47 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 118  Q
    |||||| || |||||||||||||| ||| ||||||||  |||||||| |||||||||||| ||||| |||||    
T  51042152 gaaagggttgtggttgatttggcacgcatcaatttggatgatttggaaggaaagaaatgcaaggatctttaa 51042223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 1815 - 1722
Alignment:
Q  168 tcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaa 261  Q
    |||||| |||||  |||||||||| | |||||| | || || |||||||||||||||||||||||||| ||||| ||  |||||||||||||||    
T  1815 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 1722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University