View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_44 (Length: 395)
Name: NF9557_low_44
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 1425449 - 1425817
Alignment:
| Q |
18 |
cctgagaaatatatcctatatatataataaatgcatccatctcaatcttcatttgagaaaccatgtaactgtatagaatagtctagtggaaagaatagac |
117 |
Q |
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| T |
1425449 |
cctgagaaatatatcctatatatataataaatgcatccatctcaatcttcattcgagaaaccatgtaactgtatagaatagtctagtggaaagaatagac |
1425548 |
T |
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| Q |
118 |
catgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgttgcatgat |
217 |
Q |
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| T |
1425549 |
catgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgttgcatgat |
1425648 |
T |
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| Q |
218 |
atctagttatgtagtgtgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatgtgtattatcatcattatgtaacttgatagaa |
317 |
Q |
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| T |
1425649 |
atctagttatgtaatgtgagataatgaattcaatgaataagtcttttgtaagtatgaatatcaccaatgtgtattatcatcattatgtaacttgatggaa |
1425748 |
T |
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| Q |
318 |
gtattagaaggtttagatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattat |
386 |
Q |
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| T |
1425749 |
gtattagaaggtttagatgtaggttaagatccaagtaatcttcagtcaccaagtaaacccaagtattat |
1425817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 40 - 382
Target Start/End: Original strand, 1447550 - 1447904
Alignment:
| Q |
40 |
tataataaatgcatccatctcaatcttcatttgagaaaccatgtaactgtatagaatagtctagtggaaagaata-gaccatgaacaagccaatgcttaa |
138 |
Q |
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| T |
1447550 |
tataataaatgcatacattccaaccttcatttgagaaaccatgtaactgtatacaatagtctagtggaaaaaaaaagaccatcgactagccaatgcttaa |
1447649 |
T |
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| Q |
139 |
ggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgtt-------gca--tgatatctagttatgt |
229 |
Q |
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| T |
1447650 |
ggtatttgaaaactctacaagcagtactacaatgaatatttgtgggtttggataagaattagctaagttgttaactgatgaaggtgatatctagttatgt |
1447749 |
T |
|
| Q |
230 |
agtgtgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatg--tgtattatcatcattatgtaacttgatagaagtattagaag |
327 |
Q |
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| T |
1447750 |
aatgtgagatactgaattcaatgaatgagtcttttgtaagtaggaatatcaccaatgggtgtattatcatcattatgtaacttgatagaagtattagaag |
1447849 |
T |
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| Q |
328 |
gtttagatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagta |
382 |
Q |
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| T |
1447850 |
gtttagatgtaggttaagatccaagtaatcttcagtcaccaagtaaacctaagta |
1447904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 234 - 382
Target Start/End: Original strand, 1470229 - 1470379
Alignment:
| Q |
234 |
tgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatg--tgtattatcatcattatgtaacttgatagaagtattagaaggttt |
331 |
Q |
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|||||| || ||||||||||| | ||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||| | |
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| T |
1470229 |
tgagataatgaattcaatgaaggggtcttttgtaagtaggaatatcaccaatgggtgtattatcatcattatataacttgatggaagtattataaggtct |
1470328 |
T |
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| Q |
332 |
agatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagta |
382 |
Q |
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||| |||||| ||||||| |||||||||||||| |||||||||| ||||| |
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| T |
1470329 |
tgatttaggtttagatccaagtaatcttcagtcatcaagtaaacctaagta |
1470379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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