View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_47 (Length: 393)
Name: NF9557_low_47
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 38950077 - 38950445
Alignment:
| Q |
1 |
tgttgggggtatgtggagagtctgagagatcaaccacatttgatcaaaaacaatcatacaattaagttggacatcatatcttaatgcataactttaagat |
100 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38950077 |
tgttgggggtatgtggggagtatgagagatcaaccacatttgatcaaaaacaattatacaattgagttggacatcatatcttaatgcataactttaagat |
38950176 |
T |
|
| Q |
101 |
attgagtttatggatctcaatactcaacatcgaacttttaactcacacttgctatacaataagaactacgagtattgaatctacatcgccaatgtagaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||| |
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| T |
38950177 |
attgagtttatggatctcaatactcaacatcgaacttttaactcacatttgctatacaataagaactatgagtattgaatctacaccgccaatgtaaaaa |
38950276 |
T |
|
| Q |
201 |
ctactagtactaatgtaatgtaggttaggtgtaataagggaagggctatgagggtccaaagtgggcacctatgaccacctaacagaccatagagtaaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950277 |
ctactagtactaatgtaatgtaggttaggtgtaataagggaagggctatgagggtccaaagtgggcacctatgaccacctaacagaccatagagtaaaga |
38950376 |
T |
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| Q |
301 |
gttatcgctttcattctccttaagccatgaatgaatatgcatagctctagttatgttgtgtctactata |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950377 |
gttatcgctttcattctccttaagccatgaatgaatatgcatagctctagttatgttgtgtctactata |
38950445 |
T |
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