View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_48 (Length: 387)
Name: NF9557_low_48
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 27 - 384
Target Start/End: Complemental strand, 42183206 - 42182843
Alignment:
| Q |
27 |
gttctgatcactacttatttttctatatattattgattgatggaaaacaataagaaataaacacaaattaacctttgagggttgtgttggaggcagaaat |
126 |
Q |
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| T |
42183206 |
gttctgaccactacttatgtttctatatattattgattgatggaaaacaataagaaataaacacaaattaacctttgagggttgtgttggaggcagaaat |
42183107 |
T |
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| Q |
127 |
gttgtgaaaaggttgaaaatttaaggatacaccgccattatcaatgatagcattagcacctagagcagaagaatcacccccaaaagacatgttgtatgtt |
226 |
Q |
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| T |
42183106 |
gttgtgaaaaggttgaaaatttaaggatacaccaccattatcaatgatagcattagcacctagagcagaagaatcacccccaaaagacatgttgtatgtt |
42183007 |
T |
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| Q |
227 |
gtgggaccataaccatc------agcagcagaagcagaagaagaatcatgattatgaaaaaatgaacggtggtgatgattattagagaaaccttcaaaac |
320 |
Q |
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| T |
42183006 |
gtgggaccataaccatcagcatcagcagcagaagcagaagaagaatcatgattatgaaaaaatgaacggtggtgatgattattagagaaaccttcaaaac |
42182907 |
T |
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| Q |
321 |
tctgcaccgacccaacaacaatgttggnnnnnnnnnnaggttccttgtcttgaacacgaaactc |
384 |
Q |
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| T |
42182906 |
tctgcaccgacccaacaacaatgttggttttttttttaggttccttgtcttgaacgcgaaactc |
42182843 |
T |
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