View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_52 (Length: 381)
Name: NF9557_low_52
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 12319005 - 12319364
Alignment:
| Q |
9 |
tggtgttgaagggtcactaggtgcaggggaagttttctttggtttcttgtgatggtaccttccttccacattatggatgaaaagaatcattgttatccat |
108 |
Q |
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| T |
12319005 |
tggtggtgaagggtcactaggtgcaggggaagttttctttggtttcttgtgatggtaccttccttccacattatggatgaaaagaatcattgttatccat |
12319104 |
T |
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| Q |
109 |
aggataaaaattccatgaattagactcatagt-annnnnnnnnngagtcaatgaatattgtaccaatgttaaatcatacaagtttctccaatgatgatat |
207 |
Q |
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| T |
12319105 |
aggataaaaattccatgaatgagactcatagtgattttttttttgagtcaatgaatattgtaccaatgttaaatcatacaagtttctccaatgatgatat |
12319204 |
T |
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| Q |
208 |
atctgtgnnnnnnnnnnnnnnnnntggctagcttaaattttttaatactacaaagataaatgaagcagattgatttgaaatgattttcagaaaaatcata |
307 |
Q |
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||||||| ||||||||||||| || ||||||| |||||||||||||| | ||| |||| || |||||||||||||||||||| |
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| T |
12319205 |
atctgtgaaaagaaaaatataaaatggctagcttaaaaattctaatactgcaaagataaatgaaagatattaatttaaactgattttcagaaaaatcata |
12319304 |
T |
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| Q |
308 |
gcaaatttgcctagtaagacatttatgaagctaaaggttattatttatactaagaatttg |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12319305 |
gcaaatttgcctagtaagacatttatgaagctaaaggttattatttatactaagaatttg |
12319364 |
T |
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