View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_57 (Length: 355)
Name: NF9557_low_57
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 29643869 - 29643532
Alignment:
| Q |
1 |
gtaccatgattgttccagcagctgatgcagctcttgctgttgcatattctcctgcacaaggaaaaaatgtacatgaacatcagcaatgtcaatttcatgt |
100 |
Q |
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| T |
29643869 |
gtaccatgattgttccagcagctgatgcagctcttgctgttgcatattctcctgcacaaggaaaaaatgtacatgaacatcagaaatttcaatttcatgt |
29643770 |
T |
|
| Q |
101 |
agctgtcttgtgttaaagttttcttgataaaaaatcata-gagtttgttatcaaccatttatcaaaactagacgatgacaatattttaagaattactaat |
199 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643769 |
agctgtcttgtgttaaagttttcttaataaaaaatcataagagtttgttatcaaccatttatcaaaactagacgatgacaatattttaagaattactaat |
29643670 |
T |
|
| Q |
200 |
gtctaatcacacttaatttctgtgtaatagcttatcaatagaagttacagaactagaaaccaagttatgataaacagtttgagtaagtgcgtaaagcata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29643669 |
gtctaatcacacttaatttctgtgtaatagcttatcgatagaagttacagaactagaaaccaagttatgataaacagtttgagtaagcacgtaaagcata |
29643570 |
T |
|
| Q |
300 |
agcacttatc--gtatgagtgttcatgtatatgttatt |
335 |
Q |
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|||||||||| ||||||||||||| ||||||||||| |
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| T |
29643569 |
agcacttatcatatatgagtgttcatttatatgttatt |
29643532 |
T |
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