View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_59 (Length: 351)
Name: NF9557_low_59
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 33163792 - 33163458
Alignment:
| Q |
1 |
ccttgaatatttaaatcgttggttggctcgaagcattcaagtaagggatcatcaggaatggatctgcaaaatggctggtaactccccctgcataattatt |
100 |
Q |
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| T |
33163792 |
ccttgaatatttaaatcgttggtcagctcgaagcattcaagtaagggatcatcaggaatggatctgcaaaatggctggtaactccccctgcataattatt |
33163693 |
T |
|
| Q |
101 |
cattggtaaatcaacacatcaaacgtgagaaaaggataaattacatgataagaaatttacctacggtgcaaaaagataacagcatatccagccttcagaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33163692 |
cattggtaaatcaacacatcaaacatgagaaaaggataaattacatgataagaaatttacctacggtgcaaaaagataacagcatatccagccttcagaa |
33163593 |
T |
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| Q |
201 |
agtacctgcaaaataaccaccaacacattcttctcaagagcatagaaacgaacattaaccagtttatttctaagaaaacaaggaaagtgcatcgtactcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
33163592 |
agtacctgcaaaataaccaccaacacattcttctcaagagcatagaaacgaacattaaccagtttatttctacgaaaacaaggaaagtgcgtcgtactcg |
33163493 |
T |
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| Q |
301 |
gtagaagtggcccctcgatgaccggaactgaaatt |
335 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
33163492 |
gtagaaatggcccctcgatgaccggaactgaaatt |
33163458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 46162307 - 46162427
Alignment:
| Q |
1 |
ccttgaatatttaaatcgttggttggctcgaagcattcaagtaagggatcatcaggaatggatctgcaaaatggctggtaactccccctgcataattatt |
100 |
Q |
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|||||||| ||||| |||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||| ||||||||||| |||| |
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| T |
46162307 |
ccttgaatgtttaagtcgttggtgggctcgaagcattcaagtaagggatcctcgggaagggatctgcaaaatggctggaaacttcccctgcataaatatt |
46162406 |
T |
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| Q |
101 |
cattggtaaatcaacacatcaa |
122 |
Q |
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| T |
46162407 |
cattggt-aattaacacatcaa |
46162427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 151 - 329
Target Start/End: Original strand, 46162488 - 46162667
Alignment:
| Q |
151 |
agaaatttacctacggtgcaaaaagataacagcatatccagccttcagaaagtacctgcaaaataaccaccaacacattcttctcaagagcatagaaacg |
250 |
Q |
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|||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||| |||||| | |
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| T |
46162488 |
agaaatttacctccggtacagaaagataacagcatatccagccttcagaaagtacctgcaaagtaaccaccgacctgttactctcaagataatagaattg |
46162587 |
T |
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| Q |
251 |
aacattaac-cagtttatttctaagaaaacaaggaaagtgcatcgtactcggtagaagtggcccctcgatgaccggaact |
329 |
Q |
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|| ||| || |||||||||| || | ||||||| |||| ||| ||||| || || |||||||||| |||||| ||||| |
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| T |
46162588 |
aaaatttactaagtttatttcaaaaagaacaaggcaagttgatcatactcagtggatgtggcccctctatgacctgaact |
46162667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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