View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_6 (Length: 604)
Name: NF9557_low_6
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 18 - 591
Target Start/End: Complemental strand, 9643422 - 9642849
Alignment:
| Q |
18 |
atgttgttagtgtgagtccattgccgagatcctcgtctttccttgcactataatttgtaagtacattttcacctaatttgattgctgcatgaagattctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9643422 |
atgttgttagtgtgagtccattgccgagatcctcgtctttccttgcactataatttgtaagtacattttcacctaatttgattgctgcatgaagattctt |
9643323 |
T |
|
| Q |
118 |
cagatgtccccatttaggttgattcaaattcccatactcatcaattggtgcatcatagtcatatgatgttgttatatacggtccacctgcggtgcgacca |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9643322 |
cagatgtccccatttaggttgattcaaattcccatactcatcaattggtgcatcatagtcatatgatgttgttatatacggcccacctgcggtgcgacca |
9643223 |
T |
|
| Q |
218 |
aagtttgttcctccatggtacatgtagtaattgtttaatacaccaccattttggaaaaaacgtgccacagagaaagctgaatcttcagcacttctatgtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9643222 |
aagtttgttcctccatggtacatgtagtaattgtttaatacaccaccattttggaaaaaacgtgccacagagaaagctgaatcttcagcacttctatgtg |
9643123 |
T |
|
| Q |
318 |
gaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaagattttaggactttttggattgttaggttgaaaattgtgacaataatatcc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9643122 |
gaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaaaattttaggactttttggattgttaggttgaaaattgtgacaataatatcc |
9643023 |
T |
|
| Q |
418 |
attgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtgatagagccatttgagcagcccattga |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
9643022 |
attgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtgctagagccatctgagcagcccattga |
9642923 |
T |
|
| Q |
518 |
acatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagctagaataat |
591 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9642922 |
acatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagctagaataat |
9642849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 591
Target Start/End: Complemental strand, 10545368 - 10544795
Alignment:
| Q |
18 |
atgttgttagtgtgagtccattgccgagatcctcgtctttccttgcactataatttgtaagtacattttcacctaatttgattgctgcatgaagattctt |
117 |
Q |
| |
|
||||||||||||||| |||||| || ||||||| ||| ||||||| | ||||||| |||||||| ||||| |||||||| |||||| ||||||| ||| |
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| T |
10545368 |
atgttgttagtgtgattccattaccaagatccttgtcattccttgaagtataattcgtaagtaccttttcgcctaatttaattgcttcatgaaggaactt |
10545269 |
T |
|
| Q |
118 |
cagatgtccccatttaggttgattcaaattcccatactcatcaattggtgcatcatagtcatatgatgttgttatatacggtccacctgcggtgcgacca |
217 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||| | || ||||||||||||||||| |||||| | ||||| |||||||| | ||||||||| |
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| T |
10545268 |
aagatgcccgtatttcggttgattcaaattcccatactcgttgatcggtgcatcatagtcataagatgttataatatatggtccaccagatgtgcgacca |
10545169 |
T |
|
| Q |
218 |
aagtttgttcctccatggtacatgtagtaattgtttaatacaccaccattttggaaaaaacgtgccacagagaaagctgaatcttcagcacttctatgtg |
317 |
Q |
| |
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|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |
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| T |
10545168 |
aaattggttcctccatggtacatgtagtaattgttaaatacaccaccattttggaaaaaacgtgcaacagcataagctgaatcttcagcagttctatgtg |
10545069 |
T |
|
| Q |
318 |
gaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaagattttaggactttttggattgttaggttgaaaattgtgacaataatatcc |
417 |
Q |
| |
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|| | ||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| || ||||||| |||||||||||||||||| || |
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| T |
10545068 |
gagctctttcaccccatttttgaaaccatccaatccaattttcagtgaacatttttggactttttgggttattaggtttaaaattgtgacaataataccc |
10544969 |
T |
|
| Q |
418 |
attgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtgatagagccatttgagcagcccattga |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| || ||||||| || |||||||||||||||||||| | |
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|
| T |
10544968 |
attgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagcccattta |
10544869 |
T |
|
| Q |
518 |
acatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagctagaataat |
591 |
Q |
| |
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| |||||| ||||| | |||||| ||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
10544868 |
atatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
10544795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 149 - 503
Target Start/End: Complemental strand, 279074 - 278720
Alignment:
| Q |
149 |
ccatactcatcaattggtgcatcatagtcatatgatgttgttatatacggtccacctgcggtgcgaccaaagtttgttcctccatggtacatgtagtaat |
248 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||| | ||| |||| ||||| ||||| || ||||| |||||||||||||| |||| |||||||| |
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| T |
279074 |
ccatattcatcaagtggtgcatcatagtcatatgttgtaatgataaacgggccacccgcggttcgtccaaaatttgttcctccatgatacaagtagtaat |
278975 |
T |
|
| Q |
249 |
tgtttaatacaccaccattttggaaaaaacgtgccacagagaaagctgaatcttcagcacttctatgtggaaccctttcaccccatttttggaaccaacc |
348 |
Q |
| |
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| | | ||||||||||||| || |||||||| || || || |||||||||||||| |||||||||| |||||||||||||||||||||||| || |
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| T |
278974 |
tttggagggcaccaccattttgaaagaaacgtgcaactgaaaatgctgaatcttcagctgttctatgtggcctcctttcaccccatttttggaaccagcc |
278875 |
T |
|
| Q |
349 |
aatccaattttcagtgaagattttaggactttttggattgttaggttgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagca |
448 |
Q |
| |
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|| |||||| || || || |||||||| ||||| |||||||| || | ||| ||| ||||||||| |||||||| |||| ||| |||| |||||| |
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| T |
278874 |
aacccaattctctgtaaatattttagggcttttaggattgtttggcttgaaagtgtcacaataatagccattgcatgtatcgataatagtggctggagca |
278775 |
T |
|
| Q |
449 |
tcttgttgttgacacatgatccatggaacaccaatgttttgtgatagagccattt |
503 |
Q |
| |
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| || ||| | |||||||||||||| |||||||| ||||| | || |||||||| |
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|
| T |
278774 |
tttttttgcttgcacatgatccatgggacaccaatattttgagctaaagccattt |
278720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 18584494 - 18584445
Alignment:
| Q |
437 |
ggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgtt |
486 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||| || |||||||| |
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| T |
18584494 |
ggttgaggagcatcaggttgttggcacatgatccatgggactccaatgtt |
18584445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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