View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_60 (Length: 346)
Name: NF9557_low_60
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 41265416 - 41265724
Alignment:
| Q |
17 |
tcaataaaagcctcttgtctcatgtgattttgtggtatgttttcggggaaccatgccttaattaagtgcatgtactttgacaccccaaacattttttact |
116 |
Q |
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| T |
41265416 |
tcaataaaagcctcttgtctcatgtgattttgtggtatgttttcggggaaccatgccttaattaagtgcatgtactttgacaccccaaacattttttact |
41265515 |
T |
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| Q |
117 |
ttatgttttgtattattcattgatcaccgatacacaagattaaattgcagggacaatacataatatatgtatggtttgatgttcgaaccccgaacaccnn |
216 |
Q |
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| T |
41265516 |
ttatgttttgtattattcattgatcaccgatacacaagattaaattgcagggacaatacataatatat----------atgtttgaaccccgaacaccaa |
41265605 |
T |
|
| Q |
217 |
nnnnnntatttcaaagaggttggaaccttttactatacagacaagagttgtgttcaaaattatgtcctagctcaaacttctttaatctgttcattttttg |
316 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41265606 |
aaaatatatttcaaagaggttggaaccttttactatgcagacaagagttgtgttcaaaattatgtcctagctcaaacttctttaatctgttcatttttt- |
41265704 |
T |
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| Q |
317 |
ttgtttatccaaattctctg |
336 |
Q |
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| T |
41265705 |
ttgtttatccaaattctctg |
41265724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 1120070 - 1120030
Alignment:
| Q |
167 |
ggacaatacataatatatgtatggtttgatgttcgaacccc |
207 |
Q |
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| T |
1120070 |
ggacaatacataatatatgtaaagtttggtgttcgaacccc |
1120030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 50676942 - 50676893
Alignment:
| Q |
165 |
agggacaatacataatatatgtatggtttgatgttcgaaccccgaacacc |
214 |
Q |
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| T |
50676942 |
agggacaatacatattatatgtaggggttggggttcgaaccccgaacacc |
50676893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 5117230 - 5117266
Alignment:
| Q |
167 |
ggacaatacataatatatgtatggtttgatgttcgaa |
203 |
Q |
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| T |
5117230 |
ggacaatacataatatatgtaaggtttgaggttcgaa |
5117266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 23979453 - 23979408
Alignment:
| Q |
169 |
acaatacataatatatgtatggtttgatgttcgaaccccgaacacc |
214 |
Q |
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| T |
23979453 |
acaatacataatatatgtatggtttggggttcaaaccccgaccacc |
23979408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 12126892 - 12126932
Alignment:
| Q |
168 |
gacaatacataatatatgtatggtttgatgttcgaaccccg |
208 |
Q |
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| T |
12126892 |
gacaatacataatatatgtaaggtttgaggttcaaaccccg |
12126932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 43826481 - 43826445
Alignment:
| Q |
167 |
ggacaatacataatatatgtatggtttgatgttcgaa |
203 |
Q |
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||||||||||||||||||||| ||| ||||||||||| |
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| T |
43826481 |
ggacaatacataatatatgtaaggtatgatgttcgaa |
43826445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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