View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_64 (Length: 334)
Name: NF9557_low_64
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 48636007 - 48635704
Alignment:
| Q |
18 |
aaaactgtactctattgttgcatatagtagaagttgacggcttgtgagacacttgtggaggaggtacgtacactgaatgcattgtttatgaatgaatgaa |
117 |
Q |
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| T |
48636007 |
aaaactgtactctattgttgcatatagtagaagttgacggcttgtgagacacttgtggaggaggtac----aatgaatgcattgtttatgaatgaatgaa |
48635912 |
T |
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| Q |
118 |
tgaaatcaagccttgttatgattttctcatggtattcagcttacaacatgtgcttcaacttcgatgttcaaccc-ttaaaaaataaacaattgtatcctg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48635911 |
tgaaatcaagccttgttatgattttctcatggtattcagcttacaacatgtgcttcaacttcgatgttcaaccccttaaaaaataaacaattgtatcctg |
48635812 |
T |
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| Q |
217 |
attgatctttgtcgacggtcataaagagaatgtaattaaaggaagaatgaacaaaatcttatatccaccttgatcactgttctgttcctatttttatgct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48635811 |
attgatctttgtcgacggtcataaagagaatgtaattaaaggaagaatgaacaaaatcttatatccaccttgatcactgttctgttcctatttttatgct |
48635712 |
T |
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| Q |
317 |
cacctttg |
324 |
Q |
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|||||||| |
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| T |
48635711 |
cacctttg |
48635704 |
T |
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