View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_low_65 (Length: 332)

Name: NF9557_low_65
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_low_65
NF9557_low_65
[»] chr1 (4 HSPs)
chr1 (1-314)||(4411056-4411371)
chr1 (1-72)||(4327574-4327645)
chr1 (15-90)||(42423183-42423258)
chr1 (38-96)||(441649-441707)
[»] chr8 (3 HSPs)
chr8 (15-83)||(35775218-35775286)
chr8 (1-90)||(8252812-8252901)
chr8 (15-87)||(7624591-7624663)
[»] chr4 (4 HSPs)
chr4 (46-90)||(51093272-51093316)
chr4 (37-88)||(19067434-19067485)
chr4 (21-87)||(22887822-22887888)
chr4 (21-87)||(22939486-22939552)
[»] chr7 (1 HSPs)
chr7 (15-90)||(21435994-21436070)
[»] chr2 (5 HSPs)
chr2 (1-96)||(4908798-4908893)
chr2 (36-94)||(6989789-6989847)
chr2 (1-90)||(4119409-4119498)
chr2 (49-90)||(6767689-6767730)
chr2 (1-90)||(11510968-11511056)
[»] chr3 (9 HSPs)
chr3 (1-74)||(40339257-40339329)
chr3 (38-78)||(42534464-42534504)
chr3 (1-96)||(30958044-30958139)
chr3 (1-96)||(30973856-30973951)
chr3 (1-88)||(35951047-35951134)
chr3 (18-65)||(44375518-44375564)
chr3 (47-88)||(23187691-23187732)
chr3 (1-86)||(51667153-51667238)
chr3 (38-90)||(4194008-4194060)
[»] chr6 (2 HSPs)
chr6 (1-67)||(26492568-26492634)
chr6 (45-78)||(7263099-7263132)
[»] chr5 (3 HSPs)
chr5 (36-90)||(10859855-10859909)
chr5 (38-90)||(10860373-10860425)
chr5 (46-90)||(18977376-18977420)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 4411371 - 4411056
Alignment:
Q  1 tatgtttcgatagattc--atgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagtac 98  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411371 tatgtttcgatagattctcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagtac 4411272  T
Q  99 caactctactagaaaacatccaaagatgtcaaaatccgttctacacatcagaaatcaattttttccatgttcaagagtgaaaccagcagacatatactaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411271 caactctactagaaaacatccaaagatgtcaaaatccgttctacacatcagaaatcaattttttccatgttcaagagtgaaaccagcagacatatactaa 4411172  T
Q  199 cgcaatcaggaccgtaaacggttttacgaaaaccaaatgaatgtaatgtaatctaagtggttagcaatgtaccatctgtagaagcatcaagagttgagat 298  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411171 cgcaatcaggaccataaacggttttacgaaaaccaaatgaatgtaatgtaatctaagtggttagcaatgtaccatctgtagaagcatcaagagttgagat 4411072  T
Q  299 tgctttgattcaacag 314  Q
    ||||||||||||||||    
T  4411071 tgctttgattcaacag 4411056  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4327574 - 4327645
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaa 72  Q
    |||||||  ||| |||||||||| ||| | |||| |||||||||||||| ||||||||||||||||||||||    
T  4327574 tatgtttgaatatattcatgtaatagtggcttgaacaataaattcaaggataaaaatcaattgtagaggcaa 4327645  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 42423183 - 42423258
Alignment:
Q  15 ttcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 90  Q
    |||| |||||||| | |||| |||||||||  | ||||||| |||||| ||||| ||||||||| |||||||||||    
T  42423183 ttcacgtaaaagtgggttgaccaataaatttgaagctaaaattcaattttagagacaaaagctctaaattctagct 42423258  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 441649 - 441707
Alignment:
Q  38 ataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagt 96  Q
    ||||||||||| |||||||||||||||||| || ||| ||  ||||||||||| |||||    
T  441649 ataaattcaagtctaaaaatcaattgtagaagccaaaactataaattctagctttaagt 441707  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 35775286 - 35775218
Alignment:
Q  15 ttcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaat 83  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  35775286 ttcatgtaaaagtggattgaacaatgaattcaaggctaaaaatcaattgtagagacaaaagctccaaat 35775218  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8252901 - 8252812
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 90  Q
    ||||||| |||| || ||||||||||| | |||| || |||||||||||| ||| ||||| || ||||||||| |||| ||||| |||||    
T  8252901 tatgtttagatacatgcatgtaaaagtgggttgaacagtaaattcaaggcaaaacatcaaatgaagaggcaaacgctccaaattgtagct 8252812  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 7624591 - 7624663
Alignment:
Q  15 ttcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattcta 87  Q
    |||| ||||||||  ||||| |||||| |||||||| |||| |||||||||||| ||||||||| || |||||    
T  7624591 ttcaagtaaaagtaaattgaacaataatttcaaggccaaaagtcaattgtagagccaaaagctccaacttcta 7624663  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 51093316 - 51093272
Alignment:
Q  46 aaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 90  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  51093316 aaggctaaaaatcaattgtagaggcaaaagctccaaattctagct 51093272  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 19067485 - 19067434
Alignment:
Q  37 aataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctag 88  Q
    ||||||||| ||||||| |||||||||||||| ||||||||  |||||||||    
T  19067485 aataaattcgaggctaataatcaattgtagagacaaaagcttcaaattctag 19067434  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 22887822 - 22887888
Alignment:
Q  21 taaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattcta 87  Q
    ||||||||  |||| |||||||||||||  |||||| ||||| |||||| |||||||| ||||||||    
T  22887822 taaaagttatttgaacaataaattcaagagtaaaaaccaattttagagggaaaagctctaaattcta 22887888  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 22939486 - 22939552
Alignment:
Q  21 taaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattcta 87  Q
    ||||||||  |||| |||||||||||||  |||||| ||||| |||||| |||||||| ||||||||    
T  22939486 taaaagttatttgaacaataaattcaagagtaaaaaccaattttagagggaaaagctctaaattcta 22939552  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 21435994 - 21436070
Alignment:
Q  15 ttcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagct-caaaattctagct 90  Q
    |||||| |||||| |||||| |||||| |||||  |||||| ||||| ||||||||||||||| |||||||||||||    
T  21435994 ttcatggaaaagtggattgaacaataacttcaaacctaaaattcaatggtagaggcaaaagctccaaaattctagct 21436070  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 4908893 - 4908798
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagt 96  Q
    ||||||| |||| |||||||| ||||| |||||| ||||||| | |||||| ||||||||||||||| || ||| ||  ||||| ||||| |||||    
T  4908893 tatgtttggatacattcatgttaaagtggattgaacaataaagttaaggctgaaaatcaattgtagaagccaaatctacaaattttagctttaagt 4908798  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 6989789 - 6989847
Alignment:
Q  36 caataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaa 94  Q
    |||||||||||||  | |||||||||||||||| ||||| | | |||||||||||||||    
T  6989789 caataaattcaagattgaaaatcaattgtagagtcaaaaacactaaattctagctctaa 6989847  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4119409 - 4119498
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 90  Q
    |||||||  ||| ||||||||||  ||  ||||| ||||| ||||| |||||||| |||||| ||| ||||||||||  |||||||||||    
T  4119409 tatgtttgaatacattcatgtaagcgtgaattgatcaatacattcatggctaaaagtcaattatagcggcaaaagcttcaaattctagct 4119498  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 6767730 - 6767689
Alignment:
Q  49 gctaaaaatcaattgtagaggcaaaagctcaaaattctagct 90  Q
    ||||||| ||||||||||| |||||||||| |||||||||||    
T  6767730 gctaaaattcaattgtagaagcaaaagctccaaattctagct 6767689  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 11511056 - 11510968
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 90  Q
    ||||||| | || |||||| ||||||| | |||| |||||||||  ||| ||||| | |||||||||||||||| ||| |||||||||||    
T  11511056 tatgtttagctacattcatataaaagtgggttgaacaataaatttgaggttaaaa-taaattgtagaggcaaaaactccaaattctagct 11510968  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40339329 - 40339257
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaa 74  Q
    ||||||| |||| ||| | ||||||||  ||||| |||||||||||||||| ||||||||||||||| ||||||    
T  40339329 tatgtttggatatatttaggtaaaagtgaattgaacaataaattcaaggct-aaaatcaattgtagaagcaaaa 40339257  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 42534504 - 42534464
Alignment:
Q  38 ataaattcaaggctaaaaatcaattgtagaggcaaaagctc 78  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  42534504 ataaatttaaggctaaaaaacaattgtagaggcaaaagctc 42534464  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 30958139 - 30958044
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagt 96  Q
    ||||||| |||| ||||||||||||||  ||||| |||||| || |||| ||||| ||| |||||||  ||||||||| |||| | |||| |||||    
T  30958139 tatgtttggatatattcatgtaaaagtgaattgaacaataatttaaaggttaaaagtcacttgtagaaacaaaagctctaaatcccagctttaagt 30958044  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 30973951 - 30973856
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagt 96  Q
    ||||||| |||| ||||||||||||||  ||||| |||||| || |||| ||||| ||| |||||||  ||||||||| |||| | |||| |||||    
T  30973951 tatgtttggatatattcatgtaaaagtgaattgaacaataatttaaaggttaaaagtcacttgtagaaacaaaagctctaaatcccagctttaagt 30973856  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 35951134 - 35951047
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctag 88  Q
    ||||||| |||| |||| | ||| ||| | |||| ||| |||||||| || |||| |||||||||| ||||||||| |||||||||||    
T  35951134 tatgtttagatacattcgtataatagtggcttgaacaaaaaattcaatgccaaaactcaattgtaggggcaaaagcgcaaaattctag 35951047  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 44375518 - 44375564
Alignment:
Q  18 atgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgta 65  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  44375518 atgtaaaagt-gattgaacaataaatttaaggctaaaaatcaattgta 44375564  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 23187732 - 23187691
Alignment:
Q  47 aggctaaaaatcaattgtagaggcaaaagctcaaaattctag 88  Q
    ||||||||||||||||||||||| |||| || ||||||||||    
T  23187732 aggctaaaaatcaattgtagaggtaaaaccttaaaattctag 23187691  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 51667238 - 51667153
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattct 86  Q
    ||||||| | |||||||||||||||||   |||| |||||||||||||||| || ||||||  |||  |||||| ||| |||||||    
T  51667238 tatgtttgggtagattcatgtaaaagtgcgttgaacaataaattcaaggctgaatatcaatcatagttgcaaaaactccaaattct 51667153  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 4194008 - 4194060
Alignment:
Q  38 ataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 90  Q
    |||||||  |||||||||||||||||||||||||||  ||  |||||||||||    
T  4194008 ataaattagaggctaaaaatcaattgtagaggcaaacacttcaaattctagct 4194060  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26492634 - 26492568
Alignment:
Q  1 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtaga 67  Q
    ||||||| |||| ||| ||||| | || |||||| ||||| |||| |||||||||||||||||||||    
T  26492634 tatgtttggatatatttatgtatacgtggattgaacaatatattcgaggctaaaaatcaattgtaga 26492568  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 7263132 - 7263099
Alignment:
Q  45 caaggctaaaaatcaattgtagaggcaaaagctc 78  Q
    ||||||||||||||||||||||| ||||||||||    
T  7263132 caaggctaaaaatcaattgtagaagcaaaagctc 7263099  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 10859855 - 10859909
Alignment:
Q  36 caataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 90  Q
    |||||||||  ||| |||||||||| ||| ||||||||||||| |||||||||||    
T  10859855 caataaatttgaggttaaaaatcaaatgttgaggcaaaagctccaaattctagct 10859909  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 10860373 - 10860425
Alignment:
Q  38 ataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 90  Q
    |||||| ||| |||||||||||| | ||||||||||||||  |||||||||||    
T  10860373 ataaatccaaagctaaaaatcaactctagaggcaaaagctacaaattctagct 10860425  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 18977376 - 18977420
Alignment:
Q  46 aaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 90  Q
    ||||||||||||||||||||||  ||||| ||| |||||||||||    
T  18977376 aaggctaaaaatcaattgtagaaacaaaaactctaaattctagct 18977420  T

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