View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_low_66 (Length: 331)

Name: NF9557_low_66
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_low_66
NF9557_low_66
[»] chr6 (1 HSPs)
chr6 (19-331)||(21016214-21016525)
[»] chr4 (26 HSPs)
chr4 (69-331)||(49043577-49043836)
chr4 (108-331)||(49048000-49048223)
chr4 (163-331)||(45371577-45371742)
chr4 (171-259)||(48899205-48899293)
chr4 (199-329)||(48853076-48853206)
chr4 (69-135)||(45365626-45365692)
chr4 (69-133)||(48871151-48871215)
chr4 (69-133)||(48876455-48876519)
chr4 (69-133)||(48886837-48886901)
chr4 (69-152)||(45384296-45384379)
chr4 (75-141)||(48863842-48863908)
chr4 (99-152)||(48155859-48155912)
chr4 (224-265)||(49038445-49038486)
chr4 (224-331)||(48147280-48147381)
chr4 (168-264)||(37826498-37826594)
chr4 (68-135)||(7771978-7772045)
chr4 (68-135)||(7790663-7790730)
chr4 (226-329)||(45365783-45365886)
chr4 (227-262)||(48734975-48735010)
chr4 (108-143)||(48864616-48864651)
chr4 (69-135)||(7237156-7237221)
chr4 (69-135)||(7801226-7801292)
chr4 (69-135)||(7823558-7823624)
chr4 (226-268)||(47208333-47208375)
chr4 (224-257)||(48864502-48864535)
chr4 (83-135)||(7908885-7908937)
[»] chr8 (1 HSPs)
chr8 (69-257)||(4030194-4030382)
[»] chr1 (6 HSPs)
chr1 (69-264)||(24340868-24341066)
chr1 (69-264)||(24353233-24353431)
chr1 (198-264)||(24323224-24323290)
chr1 (200-264)||(24310670-24310734)
chr1 (230-265)||(24367618-24367653)
chr1 (230-262)||(24416234-24416266)
[»] chr5 (2 HSPs)
chr5 (69-133)||(9120354-9120418)
chr5 (99-257)||(42561772-42561930)
[»] chr3 (3 HSPs)
chr3 (163-257)||(47451400-47451494)
chr3 (199-268)||(11024042-11024108)
chr3 (224-268)||(11015052-11015096)
[»] chr2 (1 HSPs)
chr2 (19-128)||(29351018-29351127)
[»] chr7 (1 HSPs)
chr7 (77-134)||(30124716-30124773)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 21016525 - 21016214
Alignment:
Q  19 ataaatataaagaaaatggtaaagataatatttcataactcattttttgtttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaag 118  Q
    |||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21016525 ataaatataaagaaaatggtaatgataatatttcctaactcttttttt-tttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaag 21016427  T
Q  119 caaagactctgtatacacagtcactcgagatccacaatcctctctacaataggaggaatgctctaaaaactgtccattttcatcatacctcaccaatcca 218  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  21016426 caaagactctgtatacacagccactcgagatccacaatcctctatacaataggaggaatactctaacaactgtccattttcatcatacctcaccaatcca 21016327  T
Q  219 gctgtaccatctgttccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21016326 gctgtaccatctgttccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttag 21016227  T
Q  319 tccaagacgaatg 331  Q
    |||||||||||||    
T  21016226 tccaagacgaatg 21016214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 69 - 331
Target Start/End: Original strand, 49043577 - 49043836
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtatacacagtcactcgagatccacaatcctctctacaat 168  Q
    ||||||||||||||||   || |||| ||| | ||| | |||||||||||||||||||||||||| | || |||| | |||   | || |||| || | |    
T  49043577 ttgtttgtgtcatctt---aaccttgttcgctatcaccggggagtgaaagcaaagactctgtatagatagccacttgggatgtgcgattctctttatatt 49043673  T
Q  169 aggaggaatgctctaaaaactgtccattttcatcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgtacaacatattgg 268  Q
    | |||| || ||||| ||||||||| |||||||||||| ||||||||||| ||  |||||| |||||||||||||||||| |||||||||||||||||||    
T  49043674 aagaggtatactctagaaactgtcctttttcatcatacttcaccaatccaacttcaccatcagttccaataatatcaccaatttttgtacaacatattgg 49043773  T
Q  269 agagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaatg 331  Q
    || ||| ||| ||||||||||| |||||||||| |||  ||||||||||||||| ||||||||    
T  49043774 agcgaagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatg 49043836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 108 - 331
Target Start/End: Original strand, 49048000 - 49048223
Alignment:
Q  108 gggagtgaaagcaaagactctgtatacacagtcactcgagatccacaatcctctctacaataggaggaatgctctaaaaactgtccattttcatcatacc 207  Q
    |||||||||||||||||||||||||||| || ||| || |||   |||| |||| || | ||||||| || ||||| ||||||||| |||||||| |||     
T  49048000 gggagtgaaagcaaagactctgtatacatagccacccgggatgtgcaattctctttatagtaggaggtatactctagaaactgtcctttttcatcgtact 49048099  T
Q  208 tcaccaatccagctgtaccatctgttccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatagagaaagt 307  Q
    ||||||||||| ||  |||||| ||| ||||||||||||||||||||||||  ||||||||||||||  || | ||||||||| ||||| |||| |||      
T  49048100 tcaccaatccaacttcaccatcagttgcaataatatcaccactttttgtacggcatattggagagaagcaatgggtgggaatgacatcagtagaaaaaac 49048199  T
Q  308 aagagtcttagtccaagacgaatg 331  Q
    || |||||||||||| ||||||||    
T  49048200 aaaagtcttagtccatgacgaatg 49048223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 331
Target Start/End: Original strand, 45371577 - 45371742
Alignment:
Q  163 tacaataggaggaatgctctaaaaactgtccattttcatcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgtacaaca 262  Q
    ||||||||||   |||||||| |||||||||||| ||||||||| |||||||||||     ||||||||||||||| |||||||| ||||||||||||||    
T  45371577 tacaataggaatgatgctctagaaactgtccattgtcatcatacttcaccaatcca---cgaccatctgttccaattatatcaccgctttttgtacaaca 45371673  T
Q  263 tattggagagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaatg 331  Q
     | ||| || || || ||||| |||| | |||| ||||  | |  || |||||||||||||||||||||    
T  45371674 caatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatg 45371742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 48899293 - 48899205
Alignment:
Q  171 gaggaatgctctaaaaactgtccattttcatcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgtaca 259  Q
    |||||||| ||||| |||| |||||| ||||||||| |||||||||||  |  ||||||||||||||||||||  ||||||||||||||    
T  48899293 gaggaatgttctaacaactctccattgtcatcatacttcaccaatccaaattcaccatctgttccaataatatagccactttttgtaca 48899205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 329
Target Start/End: Complemental strand, 48853206 - 48853076
Alignment:
Q  199 catcatacctcaccaatccagctgt-accatctgttccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaa 297  Q
    |||||||| ||||||||||| || | |||||| |||||||||||||||||||| ||||||||||||||||| || || ||  |||||||||||  |  ||    
T  48853206 catcatacttcaccaatcca-ctatcaccatccgttccaataatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactaa 48853108  T
Q  298 tagagaaagtaagagtcttagtccaagacgaa 329  Q
     ||| | |  ||||||||||||||||||||||    
T  48853107 aagaaagaacaagagtcttagtccaagacgaa 48853076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 45365626 - 45365692
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtataca 135  Q
    ||||||||||||||||||||| |||| || |||||| |||| ||||| |||||||||||||||||||    
T  45365626 ttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcaaagactctgtataca 45365692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 48871215 - 48871151
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtata 133  Q
    |||||||||||| |||||||| | || || |||||| ||||||||||||||||||||||||||||    
T  48871215 ttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtata 48871151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 48876519 - 48876455
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtata 133  Q
    |||||||||||| |||||||| | || || |||||| ||||||||||||||||||||||||||||    
T  48876519 ttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtata 48876455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 48886901 - 48886837
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtata 133  Q
    |||||||||||| |||||||| | || || |||||| ||||||||||||||||||||||||||||    
T  48886901 ttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtata 48886837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 45384296 - 45384379
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtatacacagtcactcgagatcca 152  Q
    ||||||||||||||||||||| |||| || |||||| |||  |||||||| | ||||||||||||||| | |||| ||||||||    
T  45384296 ttgtttgtgtcatcttcttaagcttgctcattgtcaccagaaagtgaaaggagagactctgtatacacggccacttgagatcca 45384379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 48863908 - 48863842
Alignment:
Q  75 gtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtatacacagtca 141  Q
    ||||||||||||||| |||| ||  |||||| |||||||||||||| |||||||||||||| |||||    
T  48863908 gtgtcatcttcttaagcttgctcactgtcattagggagtgaaagcagagactctgtatacaaagtca 48863842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 48155859 - 48155912
Alignment:
Q  99 ttgtcatcagggagtgaaagcaaagactctgtatacacagtcactcgagatcca 152  Q
    |||||| ||||||||||||||||||||||||||||||| |||||| | ||||||    
T  48155859 ttgtcaccagggagtgaaagcaaagactctgtatacacggtcacttgggatcca 48155912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 49038445 - 49038486
Alignment:
Q  224 accatctgttccaataatatcaccactttttgtacaacatat 265  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  49038445 accatctgttccaataatatgaccactttttgtacaacatat 49038486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 331
Target Start/End: Original strand, 48147280 - 48147381
Alignment:
Q  224 accatctgttccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttagtccaa 323  Q
    ||||| |||||||||||| ||||||||||||||  | ||||| || || || ||      ||||||| |||||||||| ||| |||||||||||||||||    
T  48147280 accatttgttccaataatgtcaccactttttgtggagcatataggggaaaagta------gggaatgccatcaatagacaaattaagagtcttagtccaa 48147373  T
Q  324 gacgaatg 331  Q
    ||||||||    
T  48147374 gacgaatg 48147381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 37826498 - 37826594
Alignment:
Q  168 taggaggaatgctctaaaaactgtccattttcatcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgtacaacata 264  Q
    |||||||||| |||||| |  ||||| || |||| |||| |||||||||||     ||| |||| ||||||||||||||||||||||||| ||||||    
T  37826498 taggaggaatactctaagagttgtcctttatcattatacttcaccaatccaagaccaccgtctgatccaataatatcaccactttttgtagaacata 37826594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 7772045 - 7771978
Alignment:
Q  68 tttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtataca 135  Q
    |||||||||| ||||||||||||| || || |||||| || | |||||||||| ||| ||||||||||    
T  7772045 tttgtttgtgacatcttcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtataca 7771978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 7790730 - 7790663
Alignment:
Q  68 tttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtataca 135  Q
    |||||||||| ||||||||||||| || || |||||| || | |||||||||| ||| ||||||||||    
T  7790730 tttgtttgtgacatcttcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtataca 7790663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 45365783 - 45365886
Alignment:
Q  226 catctgttccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatag--agaaagtaagagtcttagtccaa 323  Q
    |||||||||||||||||||||| ||||||||| | ||||  || || || ||  ||||||||||| |||||||||  |||| ||  ||||||| ||||||    
T  45365783 catctgttccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgt--gagtctttgtccaa 45365880  T
Q  324 gacgaa 329  Q
    ||||||    
T  45365881 gacgaa 45365886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 48734975 - 48735010
Alignment:
Q  227 atctgttccaataatatcaccactttttgtacaaca 262  Q
    |||||||||||||||||||||| |||||||||||||    
T  48734975 atctgttccaataatatcaccattttttgtacaaca 48735010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 48864651 - 48864616
Alignment:
Q  108 gggagtgaaagcaaagactctgtatacacagtcact 143  Q
    ||||||||||||||||||||||||| ||||||||||    
T  48864651 gggagtgaaagcaaagactctgtatgcacagtcact 48864616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 7237156 - 7237221
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtataca 135  Q
    |||||||||||||||| |||| | || || |||||| || |||||||||||| ||||||||||||||    
T  7237156 ttgtttgtgtcatctt-ttaagcatgctcattgtcaccaaggagtgaaagcagagactctgtataca 7237221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 7801292 - 7801226
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtataca 135  Q
    |||||| |||||||||||||| |||  || |||||  ||||||||||||||| |||||| |||||||    
T  7801292 ttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtataca 7801226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 7823624 - 7823558
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtataca 135  Q
    |||||| |||||||||||||| |||  || |||||  ||||||||||||||| |||||| |||||||    
T  7823624 ttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtataca 7823558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 47208375 - 47208333
Alignment:
Q  226 catctgttccaataatatcaccactttttgtacaacatattgg 268  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  47208375 catctcttccaataatgtcaccactttttgtagaacatattgg 47208333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 48864535 - 48864502
Alignment:
Q  224 accatctgttccaataatatcaccactttttgta 257  Q
    ||||||||||||||||||||| ||||||||||||    
T  48864535 accatctgttccaataatatcgccactttttgta 48864502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 7908937 - 7908885
Alignment:
Q  83 ttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtataca 135  Q
    ||||||| |||| || |||||| ||||||||||||||| |||||| |||||||    
T  7908937 ttcttaaacttgctcattgtcaccagggagtgaaagcagagactcggtataca 7908885  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 69 - 257
Target Start/End: Original strand, 4030194 - 4030382
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtatacacagtcactcgagatccacaatcc-tctctacaa 167  Q
    ||||||| ||||||||||||| |||| || |||| | ||||||||||||||| ||||||||| ||||  |||||| |||||||| ||||| ||  |  ||    
T  4030194 ttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaagcagagactctgtgtacatggtcacttgagatcca-aatccatcattgtaa 4030292  T
Q  168 taggaggaatgctctaaaaactgtccattttcatcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgta 257  Q
    ||| ||  ||||||||  |||||||| || ||||||||| |||||||| |||    ||||| |||||||||||||||||||||| |||||    
T  4030293 tagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgta 4030382  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 24341066 - 24340868
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtatacacagtcactcgagatcca---caatcctctctac 165  Q
    ||||||||| ||||||||||| |||  || ||||||  ||||||||||||||||||||| ||||||| || || |||  |||||   |     ||| | |    
T  24341066 ttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtatacatagccaatcggaatccatttcgtgaatctttgc 24340967  T
Q  166 aataggaggaatgctctaaaaactgtccattttcatcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgtacaacata 264  Q
    ||||| ||| |||||||||||||| ||| |  |||||||| |||||||||||||     | ||||||||||| ||||||||||||| ||||||||||||    
T  24340966 aatagtaggtatgctctaaaaactctccttcctcatcatatctcaccaatccagtacggctatctgttccaacaatatcaccacttgttgtacaacata 24340868  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 24353431 - 24353233
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtatacacagtcactcgagatcca---caatcctctctac 165  Q
    ||||||||| ||||||||||| |||  || ||||||  ||||||||||||||||||||| ||||||| || || |||  |||||   |     ||| | |    
T  24353431 ttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtatacatagccaatcggaatccatttcgtgaatctttgc 24353332  T
Q  166 aataggaggaatgctctaaaaactgtccattttcatcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgtacaacata 264  Q
    ||||| ||| |||||||||||||| ||| |  |||||||| |||||||||||||     | ||||||||||| ||||||||||||| ||||||||||||    
T  24353331 aatagtaggtatgctctaaaaactctccttcctcatcatatctcaccaatccagtacggctatctgttccaacaatatcaccacttgttgtacaacata 24353233  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 24323290 - 24323224
Alignment:
Q  198 tcatcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgtacaacata 264  Q
    |||||||| |||||||||||||   | | ||||||||||| ||||||||||||||||||||||||||    
T  24323290 tcatcatatctcaccaatccagtaattctatctgttccaacaatatcaccactttttgtacaacata 24323224  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 24310734 - 24310670
Alignment:
Q  200 atcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgtacaacata 264  Q
    |||||| |||||||||||||     ||||||||||||| ||||||||||||||||||||||||||    
T  24310734 atcatatctcaccaatccagtacatccatctgttccaacaatatcaccactttttgtacaacata 24310670  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 265
Target Start/End: Complemental strand, 24367653 - 24367618
Alignment:
Q  230 tgttccaataatatcaccactttttgtacaacatat 265  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24367653 tgttccaataatatcaccagtttttgtacaacatat 24367618  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 24416266 - 24416234
Alignment:
Q  230 tgttccaataatatcaccactttttgtacaaca 262  Q
    |||||||| ||||||||||||||||||||||||    
T  24416266 tgttccaacaatatcaccactttttgtacaaca 24416234  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 9120418 - 9120354
Alignment:
Q  69 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtata 133  Q
    ||||||||||||||| ||||| |||| || |||||| ||||||||||||||| ||||||||||||    
T  9120418 ttgtttgtgtcatctccttaagcttgttcattgtcaccagggagtgaaagcagagactctgtata 9120354  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 257
Target Start/End: Original strand, 42561772 - 42561930
Alignment:
Q  99 ttgtcatcagggagtgaaagcaaagactctgtatacacagtcactcgagatccacaatcctctctacaataggaggaatgctctaaaaactgtccatttt 198  Q
    |||||||  |||||||||||||| ||||||||||||| || || |||| |||||    | |||  ||||||||||  |||||||| |||||  || || |    
T  42561772 ttgtcattggggagtgaaagcaatgactctgtatacatagccaatcgaaatccatgtgcatcttcacaataggagttatgctctagaaactcccctttgt 42561871  T
Q  199 catcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgta 257  Q
    | | |||  |||||||||| |    ||||||||||||||||||||||||| ||||||||    
T  42561872 cgttatatttcaccaatccggtaccaccatctgttccaataatatcaccattttttgta 42561930  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 257
Target Start/End: Original strand, 47451400 - 47451494
Alignment:
Q  163 tacaataggaggaatgctctaaaaactgtccattttcatcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgta 257  Q
    ||||||||||   ||||||||| |||||||| || |||| |||| | |||||||| |    | ||||||||||||||||||||||||||||||||    
T  47451400 tacaataggaacgatgctctaacaactgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgta 47451494  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 11024042 - 11024108
Alignment:
Q  199 catcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgtacaacatattgg 268  Q
    |||||||| ||||||||||||   |||||| |||||||||||||| ||||| ||||||| | ||||||||    
T  11024042 catcatacttcaccaatccag---taccatttgttccaataatatgaccacattttgtagagcatattgg 11024108  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 11015052 - 11015096
Alignment:
Q  224 accatctgttccaataatatcaccactttttgtacaacatattgg 268  Q
    ||||| ||||||||||||| |||||||||||||| | ||||||||    
T  11015052 accatttgttccaataataccaccactttttgtagagcatattgg 11015096  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 29351127 - 29351018
Alignment:
Q  19 ataaatataaagaaaatggt-aaagataatatttcataac-tcattttttgtttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaa 116  Q
    |||| ||| |||||||| || ||||||||||||||| ||| ||||| ||   ||||||| ||||||||||||| |||| || |||||| | |||||||||    
T  29351127 ataattatcaagaaaatagtgaaagataatatttcacaacctcattcttc--ttgtttgagtcatcttcttaagcttgctcattgtcaccggggagtgaa 29351030  T
Q  117 agcaaagactct 128  Q
    |||| |||||||    
T  29351029 agcatagactct 29351018  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 30124716 - 30124773
Alignment:
Q  77 gtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtatac 134  Q
    |||| |||||||| |||| |||  | || |||||||||||||||||||||||||||||    
T  30124716 gtcaacttcttaagcttgctcgccgccaccagggagtgaaagcaaagactctgtatac 30124773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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