View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9557_low_7 (Length: 587)
Name: NF9557_low_7
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_7 |
 | |
|
| [»] scaffold0393 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 572
Target Start/End: Original strand, 2411684 - 2412238
Alignment:
| Q |
18 |
agggttctgattcattgaatggaaaaacggattgaaacctccatcacatcctattgtctgcggatgaactgatagtgaaggcaatgaagatcctctgtgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2411684 |
agggttctgattcattgaatggaaaaacggattgaaacctccatcacatcctattgtctgtggatgaactgatagtgaaggcaatgaagatcctctgtgg |
2411783 |
T |
|
| Q |
118 |
tgaattctcttgggaaaatatggaccataacctaccatataggactttctaagtggattttcacctaatatatattctacctgaaattttacaacaaatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2411784 |
tgaattctcttgggaaaatatggaccataacctaccatataggacattctaagtggattttcacctaatatatagtctacctgaaattttacaacaaatt |
2411883 |
T |
|
| Q |
218 |
ttatcaacaaaaaggagaagagattgttacaacttttttgttaaaataataataagacttgcctgtcttttcgcaacagttcttaaggtattcggagtga |
317 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2411884 |
ttattaacaaagaggagaggagattgttacaacttttttgttaaaataatattaagacttgcctgtcttttcgcaacagttcttaaggtatttggagtga |
2411983 |
T |
|
| Q |
318 |
caaagacgccaccacagttaaatgtgtgctttgtagctgccatatacttggaataggttgtaagtaagaatgttatagatgtcacatactgaagattgct |
417 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2411984 |
caaagacgccaccacagttaaatgtatgctttgtagctgccatatacttggagtaggttgtaagtaagaatgttatagatgtcacatactgaagattgct |
2412083 |
T |
|
| Q |
418 |
tgcaggtaacttgaacatgagtccccctgcacattaattcaagcaatacatgatacaacaccctctataatactctataagccatattgatttcaaattt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| |
|
|
| T |
2412084 |
tgcaggtaacttgaacatgagtccccctgcacattaattcaagcaatacatgatacaacaccctttataatactctataagccctattgatttgaaattt |
2412183 |
T |
|
| Q |
518 |
atgtcattttacattttcatgaaatcattctccattctttgaatcatttagaata |
572 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| || ||||||||||||||| |
|
|
| T |
2412184 |
atgtcattttacattttcatgaaatcattttatatttttggaatcatttagaata |
2412238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 14069 - 14490
Alignment:
| Q |
18 |
agggttctgattcattgaatggaaaaacggattgaaacctccatcacatcctattgtctgcggatgaactgatagtgaaggcaatgaagatcctctgtgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14069 |
agggttctgattcattgaatggaaaaacggattgaaacctccatcacatcctattgtctgcggatgaactgatagtgaaggcaatgaagatcctctgtgg |
14168 |
T |
|
| Q |
118 |
tgaattctcttgggaaaatatggaccataacctaccatataggactttctaagtggattttcacctaatatatattctacctgaaattttacaacaaatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14169 |
tgaattctcttgggaaaatatggaccataacctaccatataggacattctaagtggattttcacctaatatattgtctacctgaaattttacaacaaatt |
14268 |
T |
|
| Q |
218 |
ttatcaacaaaaaggagaagagattgttacaacttttttgttaaaataataataagacttgcctgtcttttcgcaacagttcttaaggtattcggagtga |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14269 |
ttatcagcaaaaaggagaagagattgttacaacttttttgttaaaataataataagacttgcctgtcttttcgcaacagttcttaaggtattcggagtga |
14368 |
T |
|
| Q |
318 |
caaagacgccaccacagttaaatgtgtgctttgtagctgccatatacttggaataggttgtaagtaagaatgttatagatgtcacatactgaagattgct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14369 |
caaagacgccaccacagttaaatgtgtgctttgtagctgccatatacttggaataggttgtaagtaagaatgttatagatgtcacatactgaagattgct |
14468 |
T |
|
| Q |
418 |
tgcaggtaacttgaacatgagt |
439 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14469 |
tgcaggtaacttgaacatgagt |
14490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University