View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_71 (Length: 328)
Name: NF9557_low_71
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 47307875 - 47308173
Alignment:
| Q |
18 |
gcagcaactatgtgattcaacatctaatatctctgaaaataccaacagtctcaggcaacctacaccatcagcttcagcagcaatttgtatctctttcctg |
117 |
Q |
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| T |
47307875 |
gcagcaactatgtgattcaacatctaatatctctgaaaataccaacagtctcaggcaacctacaccatcagcttcagcagcaatttgtatctctttcctg |
47307974 |
T |
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| Q |
118 |
caataaatatggcagtaatgtagtggaaaagtttttgcatgattcaggagtggatatatcttcctgcatcattatagaattgctaaatgatcctaatgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307975 |
caataaatatggcagtaatgtagtggaaaagtttttgcatgattcaggagtggatatatcttcctgcatcattatagaattgctaaatgatcctaatgta |
47308074 |
T |
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| Q |
218 |
acaaggctccttacggatccttatggaaattttgtcatcagtactgcattgaataaatttaaggttagctctcttgagtgcattgtgttttcttaatct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47308075 |
acaaggctccttacggatccttatggaaattttgtcatcagtactgcattgaataaatttaaggttagctctcttgaatgcattgtgttttcttaatct |
47308173 |
T |
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