View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_low_74 (Length: 322)

Name: NF9557_low_74
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_low_74
NF9557_low_74
[»] chr2 (46 HSPs)
chr2 (19-322)||(39415710-39416013)
chr2 (19-322)||(39136709-39137012)
chr2 (46-257)||(39192591-39192802)
chr2 (46-257)||(39198271-39198482)
chr2 (30-177)||(39390532-39390679)
chr2 (21-166)||(38792694-38792839)
chr2 (19-147)||(39390101-39390229)
chr2 (30-142)||(39390322-39390434)
chr2 (66-154)||(39221682-39221770)
chr2 (21-205)||(39415460-39415644)
chr2 (19-125)||(39222551-39222657)
chr2 (37-190)||(39222276-39222429)
chr2 (30-153)||(39451714-39451837)
chr2 (47-177)||(39473898-39474028)
chr2 (78-175)||(38792426-38792523)
chr2 (21-226)||(39222114-39222319)
chr2 (163-255)||(39221308-39221400)
chr2 (21-226)||(39221904-39222109)
chr2 (37-138)||(39602969-39603070)
chr2 (163-319)||(39389573-39389729)
chr2 (21-125)||(39603192-39603296)
chr2 (46-189)||(39192843-39192986)
chr2 (46-189)||(39198523-39198666)
chr2 (20-78)||(39221926-39221984)
chr2 (20-78)||(39222136-39222194)
chr2 (30-151)||(39137291-39137412)
chr2 (49-149)||(38793216-38793316)
chr2 (133-283)||(39222435-39222585)
chr2 (62-154)||(38792568-38792660)
chr2 (46-154)||(39389708-39389816)
chr2 (106-169)||(39415161-39415224)
chr2 (75-153)||(39451462-39451540)
chr2 (48-106)||(39458769-39458827)
chr2 (51-152)||(39467894-39467995)
chr2 (202-254)||(39458705-39458757)
chr2 (46-177)||(38792935-38793066)
chr2 (46-177)||(39152219-39152350)
chr2 (21-72)||(39192692-39192743)
chr2 (21-72)||(39198372-39198423)
chr2 (21-100)||(39221820-39221899)
chr2 (212-283)||(39390462-39390533)
chr2 (21-100)||(39458607-39458686)
chr2 (53-154)||(39136625-39136726)
chr2 (162-210)||(39222382-39222430)
chr2 (135-223)||(39415106-39415194)
chr2 (133-201)||(39451792-39451860)
[»] chr7 (3 HSPs)
chr7 (30-322)||(19807070-19807362)
chr7 (53-154)||(19806986-19807087)
chr7 (23-79)||(19807187-19807243)
[»] chr5 (4 HSPs)
chr5 (133-284)||(33560437-33560588)
chr5 (30-175)||(17059194-17059339)
chr5 (77-154)||(33560315-33560392)
chr5 (91-152)||(33560191-33560252)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 39415710 - 39416013
Alignment:
Q  19 ctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39415710 ctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccg 39415809  T
Q  119 gccttcatgctgcttctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39415810 gccttcatgctgcttctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttc 39415909  T
Q  219 tctttagaagcaagttccttaaactgtcctttcaatggcatcaattttgtattgagctcctccacccagttattgaaatacctctctttagattccagct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39415910 tctttagaagcaagttccttaaactgtcctttcaatggcatcaattttgtattgagctcctccacccagttattgaaatacctctctttagattccagct 39416009  T
Q  319 catt 322  Q
    ||||    
T  39416010 catt 39416013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 39137012 - 39136709
Alignment:
Q  19 ctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccg 118  Q
    ||||| |||||||||||||||||||||| ||||||||| ||| | ||||| |||| |||| |||||||||||||||||||||||||||||| ||||||||    
T  39137012 ctaacgccttgacttggatttcaaacagtttctttttaaattgctgctccatcacttggctttcaaattctctctcttttgatgcatgctccttcacccg 39136913  T
Q  119 gccttcatgctgcttctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttc 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||  |||||||||    
T  39136912 gccttcatgctgcttctcttttgactcaagctccttgattcggttctcaaactggttctttttagattccagctccttcacttggccattcagttgcttc 39136813  T
Q  219 tctttagaagcaagttccttaaactgtcctttcaatggcatcaattttgtattgagctcctccacccagttattgaaatacctctctttagattccagct 318  Q
    |||||||| |||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||  | | ||||||| ||||||||||||||||||||    
T  39136812 tctttagaggcaagttccttaatttgtcctttcaatggcatcaattttgcattgatctcctccacctcgcttttgaaatgcctctctttagattccagct 39136713  T
Q  319 catt 322  Q
    ||||    
T  39136712 catt 39136709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 46 - 257
Target Start/End: Original strand, 39192591 - 39192802
Alignment:
Q  46 gcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattc 145  Q
    |||||||| ||||||  || |||||||| |||||||| |||||||||||||||||| || |||| |||||  || ||||||| |||||||||||||| ||    
T  39192591 gcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactc 39192690  T
Q  146 aagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctctttagaagcaagttccttaaactgt 245  Q
    || |||||| | | ||  ||||||  ||||||||||||||||||| ||||| | ||||| ||| |||||||||||||||||   || ||||||||  |||    
T  39192691 aaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttagagtaaaattccttaacttgt 39192790  T
Q  246 cctttcaatggc 257  Q
    ||| ||||||||    
T  39192791 cctatcaatggc 39192802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 46 - 257
Target Start/End: Original strand, 39198271 - 39198482
Alignment:
Q  46 gcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattc 145  Q
    |||||||| ||||||  || |||||||| |||||||| |||||||||||||||||| || |||| |||||  || ||||||| |||||||||||||| ||    
T  39198271 gcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactc 39198370  T
Q  146 aagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctctttagaagcaagttccttaaactgt 245  Q
    || |||||| | | ||  ||||||  ||||||||||||||||||| ||||| | ||||| ||| |||||||||||||||||   || ||||||||  |||    
T  39198371 aaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttagagtaaaattccttaacttgt 39198470  T
Q  246 cctttcaatggc 257  Q
    ||| ||||||||    
T  39198471 cctatcaatggc 39198482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 39390532 - 39390679
Alignment:
Q  30 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgct 129  Q
    |||||| |||||||  ||||| ||||||||| ||| |||||||  ||||||||||||||||||||||||||| ||||||| ||||| |||| |||||| |    
T  39390532 acttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttcatgtt 39390631  T
Q  130 gcttctcttttgattcaagctccttgattcggttttcaaactgcttct 177  Q
    ||||||||||||| |||| |||||| ||| || ||||||| |||||||    
T  39390632 gcttctcttttgactcaaactccttcatttggctttcaaaatgcttct 39390679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 38792839 - 38792694
Alignment:
Q  21 aactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggc 120  Q
    |||||||| |||||  |||||||||  |||| |||||||| | | |||||||| || |||||||||||||||||||||||| | ||||| ||||||||||    
T  38792839 aactccttaacttgcctttcaaacaatttctgtttagattcctggtccttcacttgaccttcaaattctctctcttttgattcgtgctccttcacccggc 38792740  T
Q  121 cttcatgctgcttctcttttgattcaagctccttgattcggttttc 166  Q
    ||||||  ||||| ||||| || ||||| ||||| |||||||||||    
T  38792739 cttcatattgcttttctttcgactcaaggtccttcattcggttttc 38792694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 39390101 - 39390229
Alignment:
Q  19 ctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccg 118  Q
    |||||||||| |||||| |||| | | ||||||||||||||| ||| |||||||  ||||||||||| ||||||||||| ||| ||||||| ||||| ||    
T  39390101 ctaactccttaacttggctttcgacctgcttctttttagattccagttccttcatttggccttcaaaatctctctctttggattcatgctccttcactcg 39390200  T
Q  119 gccttcatgctgcttctcttttgattcaa 147  Q
    || |||||| |||||||||||||| ||||    
T  39390201 gctttcatgttgcttctcttttgactcaa 39390229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 39390322 - 39390434
Alignment:
Q  30 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgct 129  Q
    |||||| |||||||  ||||| ||||||||| ||| |||||||  ||||||||||||||||||||||||||| ||||||| ||||| |||| |||||| |    
T  39390322 acttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgatccatgctccttcactcggctttcatgtt 39390421  T
Q  130 gcttctcttttga 142  Q
    |||||||||||||    
T  39390422 gcttctcttttga 39390434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 39221770 - 39221682
Alignment:
Q  66 tccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcctt 154  Q
    |||||||  ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||| |||| ||||||    
T  39221770 tccttcatttggccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactcctt 39221682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 39415460 - 39415644
Alignment:
Q  21 aactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggc 120  Q
    |||||||| |||||  |||||||  ||||||||||||||| ||||||| |||| |||| || ||||||||||||||||||| ||  ||| |||||  | |    
T  39415460 aactcctttacttgtctttcaaattgcttctttttagattccagctccctcacttggcttttaaattctctctcttttgattcacactccttcacttgac 39415559  T
Q  121 cttcatgctgcttctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggcc 205  Q
    ||||||| |||||||||||||  ||||||||||| ||||   |||  || ||||||| ||| ||| |||||||||| | ||||||    
T  39415560 cttcatgttgcttctcttttgcctcaagctccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggcc 39415644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 39222657 - 39222551
Alignment:
Q  19 ctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccg 118  Q
    |||||||||| |||||| |||||| | ||||||||||||||| |||||||||||| ||   |||||||||||||||||||||| ||||||| ||||  ||    
T  39222657 ctaactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcattcg 39222558  T
Q  119 gccttca 125  Q
    |||||||    
T  39222557 gccttca 39222551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 39222429 - 39222276
Alignment:
Q  37 tttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctc 136  Q
    |||||||  |||||||||| |||| ||| |||||||  |||||||| ||| ||||||||||||||  |||||| |||||  |||||||| | ||||||||    
T  39222429 tttcaaaatgcttctttttggattccagttccttcagttggccttcgaatcctctctcttttgatttatgctccttcacttggccttcaagttgcttctc 39222330  T
Q  137 ttttgattcaagctccttgattcggttttcaaactgcttctttttagattccag 190  Q
    ||| || |||| |||||| ||| || |||| || |||||| |||||||||||||    
T  39222329 tttagactcaaactccttcatttggctttcgaaatgcttccttttagattccag 39222276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 39451837 - 39451714
Alignment:
Q  30 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgct 129  Q
    |||||| |||||||  ||||||||||||||| ||| |||||||| | |||||||||||||||| |||||||| |||||||  |||||||||| ||||| |    
T  39451837 acttggctttcaaaatgcttctttttagattccagatccttcactttgccttcaaattctctcacttttgattcatgctccatcacccggccctcatgtt 39451738  T
Q  130 gcttctcttttgattcaagctcct 153  Q
    || |||| ||| | ||||| ||||    
T  39451737 gcctctcatttaagtcaaggtcct 39451714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 39473898 - 39474028
Alignment:
Q  47 cttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattca 146  Q
    ||||||||||||||  ||| |||||||||||| |||||||||||||| |||||||  |||||| | ||| ||||| ||| |||||||||||||||| | |    
T  39473898 cttctttttagattctagccccttcacctggctttcaaattctctctgttttgatttatgctcctccactcggccatcaagctgcttctcttttgactta 39473997  T
Q  147 agctccttgattcggttttcaaactgcttct 177  Q
    |||| ||  || ||| ||||||| |||||||    
T  39473998 agcttctccatgcggctttcaaaatgcttct 39474028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 38792523 - 38792426
Alignment:
Q  78 ccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctccttgattcggttttcaaactgctt 175  Q
    |||||||||||||||  ||||||| ||||||| |||||||| ||||||||||||||||||||| | ||||| ||||| |||| | | |||||||||||    
T  38792523 ccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattccgctctcaaactgctt 38792426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 39222319 - 39222114
Alignment:
Q  21 aactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggc 120  Q
    |||||||| | |||| |||| ||  ||||| ||||||||| ||||| |||| |||||||||||||||| ||||||||||||  |  ||   |||   |||    
T  39222319 aactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctcttttgatttaaacttcctcaattggc 39222220  T
Q  121 cttcatgctgcttctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctc 220  Q
    || || | || || |||||||| |  | |||||| | | || |||||||| ||||||||||||||||||| ||||| ||||||| ||| |||||||||||    
T  39222219 ctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttctttttagattccagctccttcacttggctatcaagttgcttctc 39222120  T
Q  221 tttaga 226  Q
    ||||||    
T  39222119 tttaga 39222114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 39221400 - 39221308
Alignment:
Q  163 tttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctctttagaagcaagttccttaaactgtcctttcaatg 255  Q
    ||||||| || ||||||| ||||||||| ||||| ||||||||||| |||||||||||||| ||  ||||||||| || ||||||||||||||    
T  39221400 tttcaaagtgattcttttgagattccagctccttcacttggccatcaagttgcttctctttggagtcaagttcctcaacctgtcctttcaatg 39221308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 39222109 - 39221904
Alignment:
Q  21 aactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggc 120  Q
    |||||||| | |||| |||| ||  ||||| ||||||||| ||||| |||| |||||||||||||||  ||||||||||||  |  ||   |||   |||    
T  39222109 aactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattgcctctcttttgatttaaacttcctcaattggc 39222010  T
Q  121 cttcatgctgcttctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctc 220  Q
    || || | || || |||||||| |  | |||||| | | || |||||||| ||||||||||||||||||| ||||| ||||||| ||| |||||||||||    
T  39222009 ctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttctttttagattccagctccttcacttggctatcaagttgcttctc 39221910  T
Q  221 tttaga 226  Q
    ||||||    
T  39221909 tttaga 39221904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 39603070 - 39602969
Alignment:
Q  37 tttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctc 136  Q
    |||||||  ||||||||||||||| ||||||| |||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| | |||||| | ||||||    
T  39603070 tttcaaaatgcttctttttagattccagctccgtcacttggccttcaaactctctttcttttgattcatgctccttcaaccgactttcatgtttcttctc 39602971  T
Q  137 tt 138  Q
    ||    
T  39602970 tt 39602969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 319
Target Start/End: Original strand, 39389573 - 39389729
Alignment:
Q  163 tttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctctttagaagcaagttccttaaactgtcctttcaatggcatcaa 262  Q
    ||||||| || | ||||||||||||||  ||||| ||||||||||| |||||||||||||| ||  ||| ||||| ||| ||| |||||||| || ||||    
T  39389573 tttcaaagtggtcctttttagattccacctccttcacttggccatcaagttgcttctctttggagtcaaattcctgaaattgtactttcaatagcctcaa 39389672  T
Q  263 ttttgtattgagctcctccacccagttattgaaatacctctctttagattccagctc 319  Q
    |||||  ||||||||| ||| |  | | | ||||| | ||| |||||||||||||||    
T  39389673 ttttgatttgagctccaccatcatgctttcgaaatgcttctttttagattccagctc 39389729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 39603296 - 39603192
Alignment:
Q  21 aactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggc 120  Q
    |||||||  |||||| |||||||  ||||||||||||||| |||||||||| | ||   |||||||||||||||||||||| ||||||| ||| | ||||    
T  39603296 aactcctccacttggctttcaaaatgcttctttttagattccagctccttcgcttgaatttcaaattctctctcttttgattcatgctccttcgctcggc 39603197  T
Q  121 cttca 125  Q
    |||||    
T  39603196 cttca 39603192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 39192843 - 39192986
Alignment:
Q  46 gcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattc 145  Q
    ||||| ||||||||| |||||||| |||  ||||||| |||||  ||||||||||| ||  ||  |||||||| |||||||| ||| |||| ||||| ||    
T  39192843 gcttccttttagattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactc 39192942  T
Q  146 aagctccttgattcggttttcaaactgcttctttttagattcca 189  Q
    ||||||||| ||| || ||||||  |||||||||| | ||||||    
T  39192943 aagctccttcatttggctttcaatgtgcttcttttgaaattcca 39192986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 39198523 - 39198666
Alignment:
Q  46 gcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattc 145  Q
    ||||| ||||||||| |||||||| |||  ||||||| |||||  ||||||||||| ||  ||  |||||||| |||||||| ||| |||| ||||| ||    
T  39198523 gcttccttttagattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactc 39198622  T
Q  146 aagctccttgattcggttttcaaactgcttctttttagattcca 189  Q
    ||||||||| ||| || ||||||  |||||||||| | ||||||    
T  39198623 aagctccttcatttggctttcaatgtgcttcttttgaaattcca 39198666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 39221984 - 39221926
Alignment:
Q  20 taactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggc 78  Q
    ||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||    
T  39221984 taactccttcacttggctttcaaacagcttctttttagattccagctccttcacttggc 39221926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 39222194 - 39222136
Alignment:
Q  20 taactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggc 78  Q
    ||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||    
T  39222194 taactccttcacttggctttcaaacagcttctttttagattccagctccttcacttggc 39222136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 39137412 - 39137291
Alignment:
Q  30 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgct 129  Q
    |||||| |||||||| ||||| |||||||||  || ||| |||  |   |||||||||||||| |||||||| |||||||  |||||||||||||||| |    
T  39137412 acttggctttcaaactgcttcattttagattctagatccatcattttaacttcaaattctctcacttttgattcatgctccatcacccggccttcatgtt 39137313  T
Q  130 gcttctcttttgattcaagctc 151  Q
    | ||||||||||| | ||||||    
T  39137312 gtttctcttttgaatgaagctc 39137291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 38793316 - 38793216
Alignment:
Q  49 tctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaag 148  Q
    |||||||||| | |||||||| ||| |  ||||||||||||||  ||||| || ||||||| |||||||| |||||||| |||||||||||| | |||||    
T  38793316 tctttttagactccagctcctccactttaccttcaaattctctagcttttaattcatgctccttcacccgaccttcatgttgcttctcttttaactcaag 38793217  T
Q  149 c 149  Q
    |    
T  38793216 c 38793216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 283
Target Start/End: Complemental strand, 39222585 - 39222435
Alignment:
Q  133 tctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctctttagaagcaag 232  Q
    |||||||||||||| ||||||| ||||||  |||||| |  | || ||||||||| |  ||||| ||| ||||||| | || ||||||||||||  |||     
T  39222585 tctcttttgattcatgctccttcattcggccttcaaagtcatcctctttagattcaaactccttcactcggccatcaaatttcttctctttagactcaat 39222486  T
Q  233 ttccttaaactgtcctttcaatggcatcaattttgtattgagctcctccac 283  Q
    |||||||| ||||||||||||| || ||  |||||  |||| |||||||||    
T  39222485 ttccttaacctgtcctttcaattgcctctcttttgatttgaactcctccac 39222435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 38792660 - 38792568
Alignment:
Q  62 cagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcctt 154  Q
    ||||||| |||| ||  ||| ||||||||||| ||||||| ||||||| | |||| |||||||||| ||||||||||| || ||||| |||||    
T  38792660 cagctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctctttcgactcaagttcctt 38792568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 39389708 - 39389816
Alignment:
Q  46 gcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattc 145  Q
    ||||||||||||||| |||||||||| | || |||||||||||  |||| |||||| ||||||| | ||   || ||||| | |||||| ||||||| ||    
T  39389708 gcttctttttagattccagctccttcgcttgaccttcaaattccttctcctttgattcatgctcctgcaattggtcttcaagttgcttcccttttgactc 39389807  T
Q  146 aagctcctt 154  Q
    |||||||||    
T  39389808 aagctcctt 39389816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 39415161 - 39415224
Alignment:
Q  106 gctcattcacccggccttcatgctgcttctcttttgattcaagctccttgattcggttttcaaa 169  Q
    |||| ||||| || |||||||| |||||||||||||| ||||||||||| |||||| |||||||    
T  39415161 gctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattcggctttcaaa 39415224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 39451540 - 39451462
Alignment:
Q  75 tggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcct 153  Q
    ||||||||||| ||||| ||||||||| ||||||| |||| ||||| |||| | |||||||| ||||| ||||| ||||    
T  39451540 tggccttcaaactctctttcttttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaaggtcct 39451462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 39458827 - 39458769
Alignment:
Q  48 ttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatg 106  Q
    |||||||||||||  ||||||||||| |||||||| |||||||||| ||||||| ||||    
T  39458827 ttctttttagattcgagctccttcacatggccttcgaattctctcttttttgattcatg 39458769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 39467995 - 39467894
Alignment:
Q  51 tttttagatttcagctccttcacctggccttcaaa-ttctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagc 149  Q
    |||||| ||| ||||||||||| |||||||||||| ||||| |||||||||| ||  ||| |||  |||||||||| ||||| |||||||||| || |||    
T  39467995 tttttaaattccagctccttcatctggccttcaaatttctc-ctcttttgattcaaactccttcttccggccttcaagctgcatctcttttgactctagc 39467897  T
Q  150 tcc 152  Q
    |||    
T  39467896 tcc 39467894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 39458757 - 39458705
Alignment:
Q  202 ggccatcgagttgcttctctttagaagcaagttccttaaactgtcctttcaat 254  Q
    ||||||| |||||||||||||||||  ||||||||||||  ||||||||||||    
T  39458757 ggccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaat 39458705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 38793066 - 38792935
Alignment:
Q  46 gcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattc 145  Q
    ||||||| |||||||  ||||||||||| || ||||||||||||| ||  |||||  ||||||| |||| |||| ||||||  || ||||||||  | ||    
T  38793066 gcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactc 38792967  T
Q  146 aagctccttgattcggttttcaaactgcttct 177  Q
    ||| ||||| ||| || |||| || |||||||    
T  38792966 aagttccttcatttggctttcgaaatgcttct 38792935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 39152350 - 39152219
Alignment:
Q  46 gcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattc 145  Q
    |||||||||  |||| ||||| |||||||||||||||||||||   |||||||||| ||  | | ||||| || || ||| | || |||||||| || ||    
T  39152350 gcttcttttctgattccagcttcttcacctggccttcaaattcatcctcttttgattcaaaccccttcactcgtccatcaagttgtttctctttagactc 39152251  T
Q  146 aagctccttgattcggttttcaaactgcttct 177  Q
    ||| ||||| || ||| ||||||| |||||||    
T  39152250 aagttccttaatccggctttcaaaatgcttct 39152219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 39192692 - 39192743
Alignment:
Q  21 aactccttgacttggatttcaaacagcttctttttagatttcagctccttca 72  Q
    |||||||| ||||||  |||||| |||||||||||||||| |||||||||||    
T  39192692 aactccttcacttggcattcaaatagcttctttttagattccagctccttca 39192743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 39198372 - 39198423
Alignment:
Q  21 aactccttgacttggatttcaaacagcttctttttagatttcagctccttca 72  Q
    |||||||| ||||||  |||||| |||||||||||||||| |||||||||||    
T  39198372 aactccttcacttggcattcaaatagcttctttttagattccagctccttca 39198423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 39221899 - 39221820
Alignment:
Q  21 aactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttga 100  Q
    |||||||| | |||| |||| ||  ||||| ||||||||| ||||| |||| |||||||||||||||  |||||||||||    
T  39221899 aactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattgcctctcttttga 39221820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 39390462 - 39390533
Alignment:
Q  212 ttgcttctctttagaagcaagttccttaaactgtcctttcaatggcatcaattttgtattgagctcctccac 283  Q
    |||||||||||||||  ||||||||||||  |||||||||||| || ||  || ||| ||||||||||||||    
T  39390462 ttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctcttctgttttgagctcctccac 39390533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 39458686 - 39458607
Alignment:
Q  21 aactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttga 100  Q
    |||||||  |||||| |||||||   |||||||| ||||| |||||||||||||||  ||||||| ||||||| ||||||    
T  39458686 aactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttga 39458607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 39136726 - 39136625
Alignment:
Q  53 tttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcc 152  Q
    |||||||| |||||| |||| | |||||||||||||| | ||||   || ||||||| ||||  ||||||||| | ||| ||||||| || |||||||||    
T  39136726 tttagattccagctcattcatccggccttcaaattctttttcttccaattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctcc 39136627  T
Q  153 tt 154  Q
    ||    
T  39136626 tt 39136625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 39222430 - 39222382
Alignment:
Q  162 ttttcaaactgcttctttttagattccagttcctttacttggccatcga 210  Q
    |||||||| ||||||||||| |||||||||||||| | |||||| ||||    
T  39222430 ttttcaaaatgcttctttttggattccagttccttcagttggccttcga 39222382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 39415106 - 39415194
Alignment:
Q  135 tcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctcttt 223  Q
    |||||||||||||||||||| | | || |||| || ||||||||||  |||||||| ||||| ||| | || ||  |||||||||||||    
T  39415106 tcttttgattcaagctccttcagttggctttcgaaatgcttcttttctgattccagctccttcactcgaccttcatgttgcttctcttt 39415194  T

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Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 39451860 - 39451792
Alignment:
Q  133 tctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttactt 201  Q
    ||||||||||||  |||||||  | | || ||||||| |||||||||||||||||||| ||||| ||||    
T  39451860 tctcttttgatttgagctcctccacttggctttcaaaatgcttctttttagattccagatccttcactt 39451792  T

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Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 322
Target Start/End: Complemental strand, 19807362 - 19807070
Alignment:
Q  30 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgct 129  Q
    |||||| |||||||||||||||||||||||| | ||||| |||  |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  19807362 acttggctttcaaacagcttctttttagattgctgctccatcatttggctttcaaattctctctcttttgatgcatgctccttcatccggccttcatgct 19807263  T
Q  130 gcttctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctctttagaagc 229  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||    
T  19807262 gcttctcttttgactcaagctccttgattcggttttcaaactgcctctttttagattccagctccttcacttggccattgagttgcttctctttagaggc 19807163  T
Q  230 aagttccttaaactgtcctttcaatggcatcaattttgtattgagctcctccacccagttattgaaatacctctctttagattccagctcatt 322  Q
    ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||  | | ||||||| ||||||||||||||||||||||||    
T  19807162 aagctccttaagttgtcctttcaatggcatcaattttgtattgagctcctccacctcgcttttgaaatgcctctctttagattccagctcatt 19807070  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 19807087 - 19806986
Alignment:
Q  53 tttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcc 152  Q
    |||||||| |||||| |||||  ||||||||||||||   |||| |||| ||||||| ||||  ||||||||| | ||| ||||||| || |||||||||    
T  19807087 tttagattccagctcattcactcggccttcaaattcttgttcttctgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctcc 19806988  T
Q  153 tt 154  Q
    ||    
T  19806987 tt 19806986  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 19807243 - 19807187
Alignment:
Q  23 ctccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggcc 79  Q
    |||||||| | || |||||||| || |||||||||||| |||||||||||| |||||    
T  19807243 ctccttgattcggttttcaaactgcctctttttagattccagctccttcacttggcc 19807187  T

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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 133 - 284
Target Start/End: Complemental strand, 33560588 - 33560437
Alignment:
Q  133 tctcttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctctttagaagcaag 232  Q
    |||||||||| |||| |||||| | | |  ||||||| || ||||||||||||||||| ||||| || || ||||| |||||||||||||||||| ||||    
T  33560588 tctcttttgactcaaactccttaacttgtctttcaaagtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaag 33560489  T
Q  233 ttccttaaactgtcctttcaatggcatcaattttgtattgagctcctccacc 284  Q
    ||| | ||  ||| ||||||| | | |||||||||  |||||||||||||||    
T  33560488 ttcttgaagttgttctttcaacgacctcaattttgatttgagctcctccacc 33560437  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 17059339 - 17059194
Alignment:
Q  30 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgct 129  Q
    |||||||| |||||   ||| |||||||||| ||||||||||||  ||||||||||||| ||||||||||||   |||||  ||||| |  ||||||| |    
T  17059339 acttggatatcaaaatccttttttttagattccagctccttcactaggccttcaaattcactctcttttgatttgtgctccatcaccagtgcttcatgtt 17059240  T
Q  130 gcttctcttttgattcaagctccttgattcggttttcaaactgctt 175  Q
    | |||||||||||| |||||||||| |||||| |||| || |||||    
T  17059239 gtttctcttttgatgcaagctccttcattcggctttcgaaatgctt 17059194  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 33560392 - 33560315
Alignment:
Q  77 gccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcctt 154  Q
    ||||||||||||  |||| |||||  ||||||||||||  ||||||||| | |||||||||||||| | |||||||||    
T  33560392 gccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctcctt 33560315  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 33560252 - 33560191
Alignment:
Q  91 tctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcc 152  Q
    ||||||||||| ||  ||| ||||||||||||||||| ||| |||||||||| || ||||||    
T  33560252 tctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 33560191  T

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