View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_low_76 (Length: 320)

Name: NF9557_low_76
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_low_76
NF9557_low_76
[»] chr3 (1 HSPs)
chr3 (14-304)||(48478993-48479283)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 48478993 - 48479283
Alignment:
Q  14 agaccaaagactctccagttctgcttgacgtcaccggaatgatgtgcggcgggtgcgtctcccgagtcaaaaccattctctcctccgacgatcgagttga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48478993 agaccaaagactctccagttctgcttgacgtcaccggaatgatgtgcggcgggtgcgtctcccgagtcaaaaccattctctcctccgacgatcgagttga 48479092  T
Q  114 ctctgtagttgtcaacatgttgactgaaaccgccgctgttaagcttaaaaagctcgaagaggaatctaccagcgttgcggatggacttgctcggagattg 213  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48479093 ctctgtagttgtcaacatgttgactgaaaccgctgctgttaagcttaaaaagctcgaagaggaatctaccagcgttgcggatggacttgctcggagattg 48479192  T
Q  214 acgggatgcgggtttccgacgaagaggagagaatcgggtttaggagtttcggagaatgtgaggaagtggaaggagttggtgaagaagaaag 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48479193 acgggatgcgggtttccgacgaagaggagagaatcgggtttaggagtttcggagaatgtgaggaagtggaaggagttggtgaagaagaaag 48479283  T

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