View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_78 (Length: 309)
Name: NF9557_low_78
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 2153596 - 2153314
Alignment:
| Q |
20 |
aactgagctaactcatgcatgcatttgt--taagagtttaattgggatatattattgttgttatccataatatttttacactgaaaataatannnnnnnc |
117 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2153596 |
aactgagctaactcatgcatgcatttttattaagagtttaattgggatatattattgttgttatccataatatttttacactgaaaataatatttttttc |
2153497 |
T |
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| Q |
118 |
agaggattacaatgaagaatctcaagcaactacacacgtgcgaagactattggacataatagcctgcacaacaaaattcggaaagcccaaacgcaacata |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2153496 |
agaggattacattgaagaatctcaagcaactacacacgtgcgaagactattggacataatagcctgcacaacaaaattcggaaagcccaaacgcaacata |
2153397 |
T |
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| Q |
218 |
ccaggcccagactcatcaaagcccaagaaaaacggaaaagcccataatcaaattaagaacggtttgagcccaccggcaacacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2153396 |
ccaggcccagactcatcaaagcccaagaaaaacggaaaagcccataatcaaaataagaacggtttgagcccaccggcaacacc |
2153314 |
T |
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