View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_86 (Length: 291)
Name: NF9557_low_86
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 18926294 - 18926484
Alignment:
| Q |
9 |
tcgtgttcatactggnnnnnnngttcaaataatattttatttactctgctagtattgannnnnnngatattgggtgttgttatataaaccagtggttttg |
108 |
Q |
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| T |
18926294 |
tcgtgttcatactggaaaaaaagttcaaataatattttatttactctgctagtattgatttttttgatattgggtgttgttatataaaccagtggtttcg |
18926393 |
T |
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| Q |
109 |
ctttgaacaacaataaatcttattactgcaattcatattgaagctattcgaaatggctaagttttccttcatacctgttctcgtccttgtc |
199 |
Q |
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| T |
18926394 |
ctttgaacaacaataaatcttattactgcaattgatattgaagctattcgaaatggctaagttttccttcatacctgttctcgtccttgtc |
18926484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 18936099 - 18936170
Alignment:
| Q |
126 |
tcttattactgcaattcatattgaagctattcgaaatggctaagttttccttcatacctgttctcgtccttg |
197 |
Q |
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| T |
18936099 |
tcttatttctgcaattgatattgaagctattcgaaatggctaagttttccttcatgcccattctcgtccttg |
18936170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 18936600 - 18936671
Alignment:
| Q |
126 |
tcttattactgcaattcatattgaagctattcgaaatggctaagttttccttcatacctgttctcgtccttg |
197 |
Q |
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| T |
18936600 |
tcttatttctgcaattgatattgaagctattcgaaatggctaagttttccttcatgcccattctcgtccttg |
18936671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 18935969 - 18936064
Alignment:
| Q |
35 |
aaataatattttatttactctgctagtattgannnnnnngatattgggtgttgttatataaaccagtggttttgctttgaacaacaataaatcttat |
131 |
Q |
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| T |
18935969 |
aaataacattttatttactctgctagtatt-aactttttgttattggatgtttttatataaactagtggttttgcttttaacaacaataagtcttat |
18936064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 18936466 - 18936561
Alignment:
| Q |
35 |
aaataatattttatttactctgctagtattgannnnnnngatattgggtgttgttatataaaccagtggttttgctttgaacaacaataaatcttat |
131 |
Q |
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| T |
18936466 |
aaataacattttatttactctgctagtatt-aactttttgttattggatgtttttatataaactagtggttttgcttttaacaacaataagtcttat |
18936561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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