View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_89 (Length: 286)
Name: NF9557_low_89
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 10124955 - 10124714
Alignment:
| Q |
20 |
aatttatgcattctttcacgtaacaaaccttttgattctacgttttctctctgatttctttcacaaatcacaacccattagagaacaatgaatgactctg |
119 |
Q |
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| T |
10124955 |
aatttatgcattatttcacgtaacaaaccttttgattctacgttttctctctgatttctttcaaaaatcacaacccattagagaacaatgaatgactctg |
10124856 |
T |
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| Q |
120 |
aacaacccacacaaagtcttcctcttccgatgttaaccccgtttcaaagaatgtttgcccacccaaatattccaccacttccacaacaaccattgccact |
219 |
Q |
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| T |
10124855 |
aacaacccacacaaagtcttcctcttccgatgttaaccccgtttcaaagaatgtttgcccacccaaatattccaccacttcaacaacaaccattgccgtt |
10124756 |
T |
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| Q |
220 |
aaccttgaatattcctcaaccatcacatcctccaccaccacc |
261 |
Q |
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| T |
10124755 |
aaccttgaatattcctcaaccatcacatcctcctccaccacc |
10124714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 25043356 - 25043246
Alignment:
| Q |
87 |
tcacaacccattagagaacaatgaatgactctgaacaacccacacaaagtcttcctcttccgatgttaaccccgtttcaaagaatgtttgcccacccaaa |
186 |
Q |
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|||||| |||| |||||| |||||| |||||||||||||| | |||||||||||||||||||||| |||| | ||||||| || ||| |||||||||| |
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| T |
25043356 |
tcacaatccataagagaaaaatgaacgactctgaacaaccgatacaaagtcttcctcttccgatgctaacgctgtttcaattcatattttcccacccaaa |
25043257 |
T |
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| Q |
187 |
tattccaccac |
197 |
Q |
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|||||||||| |
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| T |
25043256 |
aattccaccac |
25043246 |
T |
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