View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_low_90 (Length: 283)

Name: NF9557_low_90
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_low_90
NF9557_low_90
[»] chr2 (21 HSPs)
chr2 (1-271)||(39416014-39416284)
chr2 (9-271)||(39136438-39136700)
chr2 (29-271)||(39473950-39474192)
chr2 (54-271)||(39152055-39152272)
chr2 (54-271)||(39422187-39422404)
chr2 (134-271)||(39458366-39458503)
chr2 (118-271)||(39487953-39488105)
chr2 (71-168)||(39458511-39458608)
chr2 (30-87)||(39391055-39391112)
chr2 (157-267)||(39215086-39215196)
chr2 (29-87)||(39222309-39222367)
chr2 (29-103)||(39389761-39389835)
chr2 (200-271)||(39495387-39495458)
chr2 (116-267)||(38792263-38792413)
chr2 (9-87)||(39390581-39390659)
chr2 (36-87)||(39221889-39221940)
chr2 (36-87)||(39222099-39222150)
chr2 (36-95)||(39415161-39415220)
chr2 (9-95)||(39451450-39451536)
chr2 (9-86)||(39390161-39390238)
chr2 (29-85)||(38792567-38792623)
[»] chr7 (1 HSPs)
chr7 (1-271)||(19806799-19807069)
[»] chr5 (2 HSPs)
chr5 (136-245)||(17059024-17059133)
chr5 (32-87)||(33560312-33560367)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 39416014 - 39416284
Alignment:
Q  1 cactcggtcttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttttgtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39416014 cactcggtcttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctcattagactcaagctccttcatgcggcttttgtaa 39416113  T
Q  101 tgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39416114 tgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaact 39416213  T
Q  201 cttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39416214 cttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 39416284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 39136700 - 39136438
Alignment:
Q  9 cttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttttgtaatgcatgtg 108  Q
    |||||||||||||||||||  ||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||| ||  |||||| | ||||| | ||    
T  39136700 cttcaaattctttttcttccaattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctg 39136601  T
Q  109 ttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtc 208  Q
    || |||||||||||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||  ||| |||||||||||||||||||||||||    
T  39136600 ttttgataccaaatcattcaccagctccttcacttggctttccaattccttttgttttgaaatgttatccatgacttgacgaagttccaactcttttgtc 39136501  T
Q  209 ttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    || ||||||| |||| |||| | |||||| ||||||| ||||  |||||| ||||||||||||    
T  39136500 tttagttctttcttgtgctctccaatcaagtcctccatcaaaccgagctgcccttcctttgct 39136438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 29 - 271
Target Start/End: Original strand, 39473950 - 39474192
Alignment:
Q  29 gattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattcc 128  Q
    |||| |||||||| || | ||||  |||| ||||||||||| |||| ||||| || |||||||||||   ||||| | |||| ||||||||||||||||     
T  39473950 gatttatgctcctccactcggccatcaagctgcttctcttttgacttaagcttctccatgcggctttcaaaatgcttctgttttgataccaaatcattca 39474049  T
Q  129 ctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| ||||||||  |||||||| ||||||||||||||||||||    
T  39474050 ctagctccttcacttggctttcaaattccttctgttttgaaatgttatccatgacttgacaaagttccatatcttttgtgttgagttcttgcttgcgctc 39474149  T
Q  229 ccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
      ||||||||||||||||||||||||||||||| |||||||||    
T  39474150 ttgaatcaattcctccaccaaatagagctgtccatcctttgct 39474192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 54 - 271
Target Start/End: Complemental strand, 39152272 - 39152055
Alignment:
Q  54 caagttgcttctctttagactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaa 153  Q
    ||||||| ||||||||||||||||| ||||| || |||||||   ||||| | ||||  ||||||||||||||| | |||||||| ||||||||||||||    
T  39152272 caagttgtttctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaa 39152173  T
Q  154 ttccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatag 253  Q
    ||||||||||||||||||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||    
T  39152172 ttccttctgttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatag 39152073  T
Q  254 agctgtccttcctttgct 271  Q
    ||||| ||||||||||||    
T  39152072 agctgcccttcctttgct 39152055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 54 - 271
Target Start/End: Original strand, 39422187 - 39422404
Alignment:
Q  54 caagttgcttctctttagactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaa 153  Q
    ||||||||||||||||||||||||| |||||||| |||||||   | ||| | |||| |||||||||||||||| | |||||   || ||||| ||| ||    
T  39422187 caagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctcggccaattggccttccaa 39422286  T
Q  154 ttccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatag 253  Q
    |||||||||||||||||||| |||  ||| || ||||||||||| || |||||| |||||||||||||||||||| | |||||| |  |||| |||| ||    
T  39422287 ttccttctgttttgaaatgtcatccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagag 39422386  T
Q  254 agctgtccttcctttgct 271  Q
    ||||||  ||||||||||    
T  39422387 agctgtgattcctttgct 39422404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 39458503 - 39458366
Alignment:
Q  134 tccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaa 233  Q
    ||||||||||| |||||||| | |||||||||||||||||||||  ||| |||| ||||||| | |||||||||||||||||||||||||||||| | ||    
T  39458503 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgatgaagttctatctcttttgtcttgagttcttgcttgcgctctccaa 39458404  T
Q  234 tcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    |||| || |||| ||||||||| ||| |||||||||||    
T  39458403 tcaagtcttccatcaaatagagttgtgcttcctttgct 39458366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 39487953 - 39488105
Alignment:
Q  118 caaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttct 217  Q
    |||||||||| | ||||||||||  ||||||||||||| |||||||||||||||||||||  ||| || ||||||||||  ||||||||| | |||||||    
T  39487953 caaatcattcaccagctccttcatctggctttcaaatttcttctgttttgaaatgttatccatgacttcacgaagttccgtctcttttgtatcgagttct 39488052  T
Q  218 tgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    |||||| || | | |||||| ||||||| |||||| ||||||||||||||||||    
T  39488053 tgcttgtgc-ctccaatcaagtcctccatcaaatatagctgtccttcctttgct 39488105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 39458608 - 39458511
Alignment:
Q  71 gactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttga 168  Q
    ||||||||||||||||| ||||||| | ||||| | |||| ||||| |||||||||| ||||||||||| | ||| ||||||||||||||| ||||||    
T  39458608 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctcttttga 39458511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 39391055 - 39391112
Alignment:
Q  30 attcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  39391055 attcatgctccttcaattggccttcaagttgtttctctttggactcaagctccttcat 39391112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 39215196 - 39215086
Alignment:
Q  157 cttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagc 256  Q
    ||||| ||||||||||||| |  ||| ||||  |||||| | ||||||||||||||| |||||||||||||| | |||||| || |||| ||||||||||    
T  39215196 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 39215097  T
Q  257 tgtccttcctt 267  Q
    |  ||||||||    
T  39215096 ttcccttcctt 39215086  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 39222367 - 39222309
Alignment:
Q  29 gattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  39222367 gatttatgctccttcacttggccttcaagttgcttctctttagactcaaactccttcat 39222309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 39389761 - 39389835
Alignment:
Q  29 gattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttttgtaatgc 103  Q
    ||||||||||||| ||||||| || ||||||||||| |||| |||||||||||||||||  ||||||| ||||||    
T  39389761 gattcatgctcctgcaattggtcttcaagttgcttcccttttgactcaagctccttcatttggcttttataatgc 39389835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 39495387 - 39495458
Alignment:
Q  200 tcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    ||||||||||||||||||||||||||||| | |||||| || |||| |||| |||||||| ||| |||||||    
T  39495387 tcttttgtcttgagttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgctttgct 39495458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 267
Target Start/End: Complemental strand, 38792413 - 38792263
Alignment:
Q  116 accaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagtt 215  Q
    |||||||||||| | |||||||||||||||||||| || | |||||| |||||||||| |||  ||| ||||  ||| |||  ||||||| |||  ||||    
T  38792413 accaaatcattcaccagctccttcacttggctttccaaatgcttctg-tttgaaatgtcatccatgacttgataaagctccttctcttttttctcaagtt 38792315  T
Q  216 cttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctt 267  Q
    ||||| | ||||| | |||||| ||||||| |||| | |||| | |||||||    
T  38792314 cttgcctacgctctccaatcaagtcctccatcaaacatagctctacttcctt 38792263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 39390581 - 39390659
Alignment:
Q  9 cttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    ||||||||||| | ||||  |||||||||||||||| | ||| | || ||||||||||||| ||||||| |||||||||    
T  39390581 cttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaaactccttcat 39390659  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 39221940 - 39221889
Alignment:
Q  36 gctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    ||||||||| |||||   |||||||||||||||||||||||| |||||||||    
T  39221940 gctccttcacttggctatcaagttgcttctctttagactcaaactccttcat 39221889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 39222150 - 39222099
Alignment:
Q  36 gctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    ||||||||| |||||   |||||||||||||||||||||||| |||||||||    
T  39222150 gctccttcacttggctatcaagttgcttctctttagactcaaactccttcat 39222099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 39415161 - 39415220
Alignment:
Q  36 gctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttt 95  Q
    ||||||||| | | ||| || ||||||||||||| ||||||||||||||||| |||||||    
T  39415161 gctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattcggcttt 39415220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 39451536 - 39451450
Alignment:
Q  9 cttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttt 95  Q
    ||||||| ||| ||||||  |||||||||||||||||  ||| | ||||||||||||| || || ||||| |||| ||| |||||||    
T  39451536 cttcaaactctctttcttttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaaggtcctccatccggcttt 39451450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 39390161 - 39390238
Alignment:
Q  9 cttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttca 86  Q
    ||||||| ||| | |||| ||||||||||||||||| | ||| | || ||||||||||||| |||||||  |||||||    
T  39390161 cttcaaaatctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgactcaaaatccttca 39390238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 38792623 - 38792567
Alignment:
Q  29 gattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttc 85  Q
    ||||||||||||| ||  |||||| || ||||||||||||| |||||||| ||||||    
T  38792623 gattcatgctcctccacctggccttcatgttgcttctctttcgactcaagttccttc 38792567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 19807069 - 19806799
Alignment:
Q  1 cactcggtcttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttttgtaa 100  Q
    ||||||| |||||||||||| |||||| |||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||| ||  |||||| | ||    
T  19807069 cactcggccttcaaattcttgttcttctgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaa 19806970  T
Q  101 tgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaact 200  Q
    ||| | |||| ||||||||||||||||   ||||||||||| |||||||| |||||||| |||||||||||||||||  ||| |||| ||||||||||||    
T  19806969 tgcttctgttttgataccaaatcattcatcagctccttcacgtggctttccaattccttttgttttgaaatgttatccatgacttgatgaagttccaact 19806870  T
Q  201 cttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    |||||||||| ||||||| ||||||||| | |||||| ||||||| ||||  |||||| ||||||||||||    
T  19806869 cttttgtctttagttctttcttgcgctctccaatcaagtcctccatcaaacggagctgcccttcctttgct 19806799  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 17059133 - 17059024
Alignment:
Q  136 cttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatc 235  Q
    ||||| || ||||||||| | |||||||||||||||||||||  ||| ||||||||||||   ||||||||||  |||||||||||||||||| | ||||    
T  17059133 cttcaatttgctttcaaaatgcttctgttttgaaatgttatccatgacttgacgaagttctctctcttttgtcacgagttcttgcttgcgctctccaatc 17059034  T
Q  236 aattcctcca 245  Q
    || |||||||    
T  17059033 aagtcctcca 17059024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 33560367 - 33560312
Alignment:
Q  32 tcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    |||||||| |||||| ||||| |||||||||||||||| |||| ||||||||||||    
T  33560367 tcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcat 33560312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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