View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_93 (Length: 280)
Name: NF9557_low_93
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 23071846 - 23071595
Alignment:
| Q |
12 |
agattatactcaatgatgcaactcaaatgtgtcacaattttgaagtttgatatttcgattttagtagatgatggtatggttgcaacttgcaatcaaattt |
111 |
Q |
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| T |
23071846 |
agattatattcaatgatgcaactcaaatgtgtcacaattttgaagtttgatatttcgattttagtagatgatggtatggttgcaactggcaatcaaattt |
23071747 |
T |
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| Q |
112 |
tgtgtaagtgcatgtgtgcctgcctatttcttaatattgctaagtattccatagtcctttaaaatcaattattccctaatccatagtaagttatgcatct |
211 |
Q |
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| T |
23071746 |
tgtgtaagtgcatgtgtgcctgcctatttcttaatattgctaagtattccatagtcctttaaaatcaattattccctaatccatagtaagttatgcatct |
23071647 |
T |
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| Q |
212 |
agaaatttcccttacttctctgttacatatgcagtagtttcgaatttttgtt |
263 |
Q |
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| T |
23071646 |
agaaatttcccttacttctgtgttacatatgcagtagtttctaatttttgtt |
23071595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 23059431 - 23059498
Alignment:
| Q |
195 |
tagtaagttatgcatctagaaatttcccttacttctctgttacatatgcagtagtttcgaatttttgttg |
264 |
Q |
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| T |
23059431 |
tagtaagttatgcatctaaaaatttccctcact--tatgttacatatgaactagtttccaatttttgttg |
23059498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 23095943 - 23095897
Alignment:
| Q |
21 |
tcaatgatgcaactcaaatgtgtcacaattttgaagtttgatatttc |
67 |
Q |
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| T |
23095943 |
tcaatgatgcatttcaaatgtgtcacaattttgaagtttgatgtttc |
23095897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 23127638 - 23127592
Alignment:
| Q |
21 |
tcaatgatgcaactcaaatgtgtcacaattttgaagtttgatatttc |
67 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||| |||| |
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| T |
23127638 |
tcaatgatgcagctcaaatgtgtcacaattttaaagtttgatgtttc |
23127592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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