View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_low_94 (Length: 278)

Name: NF9557_low_94
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_low_94
NF9557_low_94
[»] scaffold0097 (1 HSPs)
scaffold0097 (2-262)||(16671-16931)
[»] chr2 (3 HSPs)
chr2 (2-262)||(20712832-20713092)
chr2 (42-90)||(20975226-20975274)
chr2 (203-242)||(20975080-20975119)
[»] chr7 (13 HSPs)
chr7 (42-98)||(18953268-18953324)
chr7 (42-98)||(18983315-18983371)
chr7 (42-98)||(18997961-18998017)
chr7 (50-98)||(18988125-18988173)
chr7 (41-81)||(22036781-22036821)
chr7 (42-81)||(22021063-22021102)
chr7 (51-81)||(20351799-20351829)
chr7 (51-88)||(661024-661061)
chr7 (43-92)||(24391077-24391126)
chr7 (43-79)||(16846801-16846837)
chr7 (42-98)||(19637580-19637636)
chr7 (52-92)||(22028324-22028364)
chr7 (43-75)||(22039898-22039930)
[»] chr1 (1 HSPs)
chr1 (54-92)||(39379433-39379471)
[»] chr4 (2 HSPs)
chr4 (54-99)||(3557379-3557424)
chr4 (54-98)||(3565398-3565442)


Alignment Details
Target: scaffold0097 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 262
Target Start/End: Original strand, 16671 - 16931
Alignment:
Q  2 cacagttccgaccgacataccacaaatgactaggatacgaaggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctcatt 101  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16671 cacagttccaaccgacataccaccaatgactaggatacgaaggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctcatt 16770  T
Q  102 ggtgcagaaccctacaagcttatgtttggcagttaaattatcataacctaacgagaaatggaaatgggaatcgggttccttatctgaaattaaaaaagag 201  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16771 ggtgcggaaccctacaagcttatgtttggcagttaaattatcataacctaacgagaaatggaaatgggaatcgtgttccttatctgaaattaaaaaagag 16870  T
Q  202 cctagtttaacagacgatgacctcgtggctgggttccagaaaccaaaagagtactcgtaat 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16871 cctagtttaacagacgatgacctcgtggctgggttccagaaaccaaaagagtactcgtaat 16931  T

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Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 262
Target Start/End: Original strand, 20712832 - 20713092
Alignment:
Q  2 cacagttccgaccgacataccacaaatgactaggatacgaaggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctcatt 101  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20712832 cacagttccaaccgacataccaccaatgactaggatacgaaggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctcatt 20712931  T
Q  102 ggtgcagaaccctacaagcttatgtttggcagttaaattatcataacctaacgagaaatggaaatgggaatcgggttccttatctgaaattaaaaaagag 201  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20712932 ggtgcggaaccctacaagcttatgtttggcagttaaattatcataacctaacgagaaatggaaatgggaatcgtgttccttatctgaaattaaaaaagag 20713031  T
Q  202 cctagtttaacagacgatgacctcgtggctgggttccagaaaccaaaagagtactcgtaat 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20713032 cctagtttaacagacgatgacctcgtggctgggttccagaaaccaaaagagtactcgtaat 20713092  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 20975274 - 20975226
Alignment:
Q  42 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaact 90  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  20975274 aggaaaactttgaatatttctccaaatattttcgcccaaagtgaaaact 20975226  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 20975119 - 20975080
Alignment:
Q  203 ctagtttaacagacgatgacctcgtggctgggttccagaa 242  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  20975119 ctagtttatcagacaatgacctcgtggctgggttccagaa 20975080  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 18953268 - 18953324
Alignment:
Q  42 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 98  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  18953268 aggaaaactttgaatatgtctccaaacattatcgccaaaattgaaaactctcacctc 18953324  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 18983315 - 18983371
Alignment:
Q  42 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 98  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  18983315 aggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctc 18983371  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 18997961 - 18998017
Alignment:
Q  42 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 98  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  18997961 aggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctc 18998017  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 18988125 - 18988173
Alignment:
Q  50 attgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 98  Q
    ||||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  18988125 attgaatatgtctccaaacattatcgcctaaattgaaaactctcacctc 18988173  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 22036821 - 22036781
Alignment:
Q  41 aaggaaaacattgaatatttctccaaacattatcgcccaaa 81  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  22036821 aaggaaaactttcaatatttctccaaacattatcgcccaaa 22036781  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 22021102 - 22021063
Alignment:
Q  42 aggaaaacattgaatatttctccaaacattatcgcccaaa 81  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  22021102 aggaaaactttcaatatttctccaaacattatcgcccaaa 22021063  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 20351829 - 20351799
Alignment:
Q  51 ttgaatatttctccaaacattatcgcccaaa 81  Q
    |||||||||||||||||||||||||||||||    
T  20351829 ttgaatatttctccaaacattatcgcccaaa 20351799  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 661024 - 661061
Alignment:
Q  51 ttgaatatttctccaaacattatcgcccaaagtgaaaa 88  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  661024 ttgaatatttctccaaacattatcgcctaaattgaaaa 661061  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 24391126 - 24391077
Alignment:
Q  43 ggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactct 92  Q
    ||||||| ||||||||||||||||| |||||| |||||| | ||||||||    
T  24391126 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactct 24391077  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 16846801 - 16846837
Alignment:
Q  43 ggaaaacattgaatatttctccaaacattatcgccca 79  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  16846801 ggaaaactttgaatatttctccaagcattatcgccca 16846837  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 19637580 - 19637636
Alignment:
Q  42 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 98  Q
    |||||||| |||||||||||||||||| ||||| || ||| | |||||||| |||||    
T  19637580 aggaaaactttgaatatttctccaaactttatcaccaaaactaaaaactctcacctc 19637636  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 22028364 - 22028324
Alignment:
Q  52 tgaatatttctccaaacattatcgcccaaagtgaaaactct 92  Q
    |||||||| ||||||||||||||||||||| | ||||||||    
T  22028364 tgaatattcctccaaacattatcgcccaaactaaaaactct 22028324  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 22039930 - 22039898
Alignment:
Q  43 ggaaaacattgaatatttctccaaacattatcg 75  Q
    ||||||| |||||||||||||||||||||||||    
T  22039930 ggaaaactttgaatatttctccaaacattatcg 22039898  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 39379433 - 39379471
Alignment:
Q  54 aatatttctccaaacattatcgcccaaagtgaaaactct 92  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  39379433 aatatttctccaaacattatcacccaaactgaaaactct 39379471  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 3557424 - 3557379
Alignment:
Q  54 aatatttctccaaacattatcgcccaaagtgaaaactctgacctca 99  Q
    ||||||||||||||||||||| || ||| |||||||||| ||||||    
T  3557424 aatatttctccaaacattatcacctaaactgaaaactctaacctca 3557379  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 3565442 - 3565398
Alignment:
Q  54 aatatttctccaaacattatcgcccaaagtgaaaactctgacctc 98  Q
    ||||||||||||||||||||| || ||| |||||||||| |||||    
T  3565442 aatatttctccaaacattatcacctaaactgaaaactctcacctc 3565398  T

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