View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_low_98 (Length: 267)

Name: NF9557_low_98
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_low_98
NF9557_low_98
[»] chr6 (4 HSPs)
chr6 (13-263)||(21015968-21016218)
chr6 (37-125)||(21979439-21979527)
chr6 (233-267)||(14197343-14197377)
chr6 (230-259)||(21979296-21979325)
[»] chr4 (37 HSPs)
chr4 (25-259)||(48852837-48853074)
chr4 (13-147)||(49043975-49044109)
chr4 (38-263)||(45371738-45371963)
chr4 (151-263)||(49043832-49043944)
chr4 (151-263)||(49048219-49048330)
chr4 (219-267)||(7878736-7878784)
chr4 (190-263)||(49038542-49038615)
chr4 (219-263)||(7773489-7773533)
chr4 (227-267)||(7908663-7908703)
chr4 (225-263)||(48147377-48147415)
chr4 (226-263)||(48864395-48864432)
chr4 (227-263)||(7790441-7790477)
chr4 (47-147)||(49048361-49048461)
chr4 (39-146)||(48705169-48705276)
chr4 (227-262)||(48903316-48903351)
chr4 (225-263)||(45384556-45384594)
chr4 (225-263)||(48156093-48156131)
chr4 (37-107)||(48903123-48903193)
chr4 (37-79)||(50250625-50250667)
chr4 (227-263)||(7766003-7766039)
chr4 (231-263)||(7771760-7771792)
chr4 (227-267)||(7786825-7786865)
chr4 (227-263)||(7813838-7813874)
chr4 (219-259)||(45365888-45365928)
chr4 (25-125)||(48147521-48147621)
chr4 (47-107)||(48876030-48876090)
chr4 (227-267)||(50666676-50666716)
chr4 (219-257)||(48899093-48899131)
chr4 (37-78)||(7773683-7773724)
chr4 (231-263)||(7237407-7237439)
chr4 (227-263)||(7800998-7801034)
chr4 (227-267)||(47208238-47208278)
chr4 (35-83)||(48861420-48861468)
chr4 (47-75)||(48863425-48863453)
chr4 (39-107)||(48870718-48870786)
chr4 (39-107)||(48886404-48886472)
chr4 (47-75)||(49041006-49041034)
[»] chr3 (4 HSPs)
chr3 (24-263)||(11005592-11005831)
chr3 (37-263)||(11015155-11015381)
chr3 (37-263)||(11024167-11024393)
chr3 (40-257)||(47451570-47451793)
[»] chr8 (4 HSPs)
chr8 (25-125)||(4031711-4031811)
chr8 (225-263)||(4962183-4962221)
chr8 (222-263)||(4031590-4031631)
chr8 (227-258)||(15349244-15349275)
[»] chr5 (6 HSPs)
chr5 (219-267)||(179411-179459)
chr5 (219-263)||(9120116-9120160)
chr5 (226-267)||(42561993-42562034)
chr5 (40-123)||(29696401-29696484)
chr5 (35-75)||(179218-179258)
chr5 (35-75)||(9119923-9119963)
[»] chr7 (1 HSPs)
chr7 (219-261)||(48884177-48884219)
[»] chr1 (5 HSPs)
chr1 (220-260)||(24310570-24310610)
chr1 (220-267)||(24416132-24416179)
chr1 (13-74)||(24415925-24415986)
chr1 (15-75)||(24310350-24310410)
chr1 (235-267)||(24323139-24323171)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 21015968 - 21016218
Alignment:
Q  13 gattattctatggtagggtcggtttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatag 112  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21015968 gattattccatggtagggtcggtttttaatggggctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatag 21016067  T
Q  113 aaagaaaacttttcgacatgtctttgccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21016068 aaagaaaacttttcgacatgtctttgccggatgatatggaacatgaacctatatattgtgatttgtgggtattcggtgaatttttgagtgtatggactat 21016167  T
Q  213 ggagagtgatatagttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  21016168 ggatagtgatatagttgaaatatgggttatgaaagaatacaaagtacattc 21016218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 21979527 - 21979439
Alignment:
Q  37 tttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaactttt 125  Q
    |||||| || |||||||||||||| |||||||  ||||||||||  ||   |||||  ||||||||||||| |||||||| ||||||||    
T  21979527 tttaatagggctattcattggttgacttttcggtatgatttatctgtgtttgttattgttgcctttgatttaatagaaaggaaactttt 21979439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 14197377 - 14197343
Alignment:
Q  233 tatgggtgatgaaagaatacaaagtgcattcatct 267  Q
    ||||||||||||||||||||||| |||||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatct 14197343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 21979325 - 21979296
Alignment:
Q  230 aaatatgggtgatgaaagaatacaaagtgc 259  Q
    ||||||||||||||||||||||||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgc 21979296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 48852837 - 48853074
Alignment:
Q  25 gtagggtcggtttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaa---gttatcattgcctttgatttgatagaaagaaaac 121  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||    |||||  | ||||||||||| || ||||| ||||    
T  48852837 gtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaac 48852936  T
Q  122 ttttcgacatgtctttgccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtga 221  Q
    |||| ||  ||||||||||||||||| |  | ||||||||||  ||||| ||||||||||| ||  | |||||| | ||| |||||   |||| |  |||    
T  48852937 ttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggtcatgggggatga 48853036  T
Q  222 tatagttgaaatatgggtgatgaaagaatacaaagtgc 259  Q
    || ||||||||||||||| |||||||||||||||||||    
T  48853037 tacagttgaaatatgggtcatgaaagaatacaaagtgc 48853074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 49044109 - 49043975
Alignment:
Q  13 gattattctatggtagggtcggtttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatag 112  Q
    |||||||| |||||||||||| | ||||||||| ||||||| ||||||||||||| || ||||||||||||||| |||||  ||||||||||||| || |    
T  49044109 gattattccatggtagggtcgctctttaatggggctattcactggttggcttttcatcttgatttatcaatgaatgttattgttgcctttgatttaattg 49044010  T
Q  113 aaagaaaacttttcgacatgtctttgccggatgat 147  Q
    |||| |||||||| ||||| |||||||| ||||||    
T  49044009 aaaggaaacttttagacatatctttgccagatgat 49043975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 263
Target Start/End: Complemental strand, 45371963 - 45371738
Alignment:
Q  38 ttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtcttt 137  Q
    |||||||| ||||| |||||||| ||||||||||||||||||| ||||  |||||  ||||||||||||| || ||| | |||||||| || ||||||||    
T  45371963 ttaatggggctatttattggttgtcttttcgtcatgatttatcgatgagtgttattcttgcctttgatttaatggaacggaaacttttagagatgtcttt 45371864  T
Q  138 gccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaatatgg 237  Q
    ||| |||| | | || | ||  |||| |||||||||||| ||||| |||||  ||||| | ||| | ||| ||| | ||   |||| |||||||||||||    
T  45371863 gcctgatggttttgaccctggtcctacatattgtgatttttgggtattcggaaaatttctcagtctttgggctaagaaggaagatacagttgaaatatgg 45371764  T
Q  238 gtgatgaaagaatacaaagtgcattc 263  Q
    || |||||||||||||||||||||||    
T  45371763 gttatgaaagaatacaaagtgcattc 45371738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 49043944 - 49043832
Alignment:
Q  151 gaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaatatgggtgatgaaagaat 250  Q
    ||||||||||||| | |||||||||||||||| || |||||| || | |||||||||||||   ||| ||||||||||||||||||||||||||||||||    
T  49043944 gaacatgaacctacagattgtgatttgtgggtatttggtgaacttcttagtgtatggactagacagaatgatatagttgaaatatgggtgatgaaagaat 49043845  T
Q  251 acaaagtgcattc 263  Q
    |||||||||||||    
T  49043844 acaaagtgcattc 49043832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 49048330 - 49048219
Alignment:
Q  151 gaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaatatgggtgatgaaagaat 250  Q
    |||||| |||||| | |||||||||||||||| || ||||| ||| | ||||||||||||| | ||  |||||||||||||||||||||||||||||| |    
T  49048330 gaacattaacctacagattgtgatttgtgggtatt-ggtgagtttctcagtgtatggactaagcaggatgatatagttgaaatatgggtgatgaaagagt 49048232  T
Q  251 acaaagtgcattc 263  Q
    | |||||||||||    
T  49048231 ataaagtgcattc 49048219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 7878736 - 7878784
Alignment:
Q  219 tgatatagttgaaatatgggtgatgaaagaatacaaagtgcattcatct 267  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7878736 tgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatct 7878784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 49038615 - 49038542
Alignment:
Q  190 gaatttttgagtgtatggactatggagagtgatatagttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    |||||| | ||||||||| |||||||| ||| ||  |||||||||||||||||||||||||||||||| |||||    
T  49038615 gaatttctcagtgtatgggctatggagcgtgctaccgttgaaatatgggtgatgaaagaatacaaagttcattc 49038542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 7773533 - 7773489
Alignment:
Q  219 tgatatagttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  7773533 tgatacagttgaaatatgggtgatgaaagaatacaaagtgcattc 7773489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 7908663 - 7908703
Alignment:
Q  227 ttgaaatatgggtgatgaaagaatacaaagtgcattcatct 267  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatct 7908703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 48147415 - 48147377
Alignment:
Q  225 agttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48147415 agttgaaatatgggtgatgaaagaatacaaagtgcattc 48147377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 48864395 - 48864432
Alignment:
Q  226 gttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattc 48864432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 7790441 - 7790477
Alignment:
Q  227 ttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    |||||||||||||||||||||||||||||||||||||    
T  7790441 ttgaaatatgggtgatgaaagaatacaaagtgcattc 7790477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 49048461 - 49048361
Alignment:
Q  47 ctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctttgccggatga 146  Q
    ||||||| ||||||||||||| || ||||||||| ||||| |||||  ||||||||||||| |  |||||||| ||| | || |||||| |||| |||||    
T  49048461 ctattcactggttggcttttcatcttgatttatcgatgaatgttattgttgcctttgatttaacggaaagaaaccttgtagatatgtctctgccagatga 49048362  T
Q  147 t 147  Q
    |    
T  49048361 t 49048361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 48705276 - 48705169
Alignment:
Q  39 taatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctttg 138  Q
    ||||||| |||||||||||||||||| |||||||||||||  || | | |||||  ||||||||||||| || |||||  ||||||| || |||  ||||    
T  48705276 taatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaactttttgatatgcttttg 48705177  T
Q  139 ccggatga 146  Q
    || |||||    
T  48705176 ccagatga 48705169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 48903316 - 48903351
Alignment:
Q  227 ttgaaatatgggtgatgaaagaatacaaagtgcatt 262  Q
    ||||||||||||||||||||||||||||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatt 48903351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 45384594 - 45384556
Alignment:
Q  225 agttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  45384594 agttgaaatatgggtgatgaaagaatataaagtgcattc 45384556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 48156131 - 48156093
Alignment:
Q  225 agttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  48156131 agttgaaatatgggtgatgaacgaatacaaagtgcattc 48156093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 48903123 - 48903193
Alignment:
Q  37 tttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 107  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||  || ||| |||||  |||||||||||||    
T  48903123 tttaatggggctattcattagttggcttttcatcatgatttaagaaagaatgttattgttgcctttgattt 48903193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 50250667 - 50250625
Alignment:
Q  37 tttaatgggactattcattggttggcttttcgtcatgatttat 79  Q
    ||||||||| ||||||||||||||||||||||| |||||||||    
T  50250667 tttaatggggctattcattggttggcttttcgttatgatttat 50250625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 7766003 - 7766039
Alignment:
Q  227 ttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7766003 ttgaaatatgggtgatgaaagaatacaaagtgtattc 7766039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 7771760 - 7771792
Alignment:
Q  231 aatatgggtgatgaaagaatacaaagtgcattc 263  Q
    |||||||||||||||||||||||||||||||||    
T  7771760 aatatgggtgatgaaagaatacaaagtgcattc 7771792  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 7786825 - 7786865
Alignment:
Q  227 ttgaaatatgggtgatgaaagaatacaaagtgcattcatct 267  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  7786825 ttgaaatatgggtgatgaaagaatacaacgtgcatttatct 7786865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 7813838 - 7813874
Alignment:
Q  227 ttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    |||||||||||||| ||||||||||||||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattc 7813874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 45365928 - 45365888
Alignment:
Q  219 tgatatagttgaaatatgggtgatgaaagaatacaaagtgc 259  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  45365928 tgatacagttgaaatatgggtgatgaaagaatataaagtgc 45365888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 48147621 - 48147521
Alignment:
Q  25 gtagggtcggtttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttt 124  Q
    ||||||||  |||||| |||| |||||||||||||||||||||   |||||||| ||| | | ||||| ||||| |||||||| || ||||| | |||||    
T  48147621 gtagggtcactttttagtggggctattcattggttggcttttcacaatgatttagcaagggatgttattattgcatttgatttaatggaaaggagacttt 48147522  T
Q  125 t 125  Q
    |    
T  48147521 t 48147521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 48876030 - 48876090
Alignment:
Q  47 ctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 107  Q
    |||||||||||||||||| |||| ||||||||  || ||| |||||| |||||||||||||    
T  48876030 ctattcattggttggcttatcgtgatgatttacaaaagaatgttatccttgcctttgattt 48876090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 50666676 - 50666716
Alignment:
Q  227 ttgaaatatgggtgatgaaagaatacaaagtgcattcatct 267  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  50666676 ttgaattatgggtgatgtaagaatacaaagtgcattcatct 50666716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 48899093 - 48899131
Alignment:
Q  219 tgatatagttgaaatatgggtgatgaaagaatacaaagt 257  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  48899093 tgatacagttgaaatatgggtgatgaaagaatataaagt 48899131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 7773724 - 7773683
Alignment:
Q  37 tttaatgggactattcattggttggcttttcgtcatgattta 78  Q
    ||||||||| ||||||||||||||||||| |||| |||||||    
T  7773724 tttaatggggctattcattggttggctttgcgtcgtgattta 7773683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 7237439 - 7237407
Alignment:
Q  231 aatatgggtgatgaaagaatacaaagtgcattc 263  Q
    ||||||||||||||||||||||||| |||||||    
T  7237439 aatatgggtgatgaaagaatacaaaatgcattc 7237407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 7800998 - 7801034
Alignment:
Q  227 ttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattc 7801034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 47208238 - 47208278
Alignment:
Q  227 ttgaaatatgggtgatgaaagaatacaaagtgcattcatct 267  Q
    |||||||| |||||||||||||||||||||| || ||||||    
T  47208238 ttgaaataagggtgatgaaagaatacaaagtacaatcatct 47208278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 48861420 - 48861468
Alignment:
Q  35 tttttaatgggactattcattggttggcttttcgtcatgatttatcaat 83  Q
    |||||||||||||||||||||  ||| |||||| || ||||||||||||    
T  48861420 tttttaatgggactattcattaattgacttttcatcgtgatttatcaat 48861468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 48863425 - 48863453
Alignment:
Q  47 ctattcattggttggcttttcgtcatgat 75  Q
    |||||||||||||||||||||||||||||    
T  48863425 ctattcattggttggcttttcgtcatgat 48863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 48870718 - 48870786
Alignment:
Q  39 taatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 107  Q
    ||||||| |||||||||||||||||| ||||  || ||||  || ||| |||||| |||||||||||||    
T  48870718 taatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgattt 48870786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 48886404 - 48886472
Alignment:
Q  39 taatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 107  Q
    ||||||| |||||||||||||||||| ||||  || ||||  || ||| |||||| |||||||||||||    
T  48886404 taatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgattt 48886472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 49041034 - 49041006
Alignment:
Q  47 ctattcattggttggcttttcgtcatgat 75  Q
    |||||||||||||||||||||||||||||    
T  49041034 ctattcattggttggcttttcgtcatgat 49041006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 263
Target Start/End: Complemental strand, 11005831 - 11005592
Alignment:
Q  24 ggtagggtcggtttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaactt 123  Q
    ||||||| || |||||||||||||||||||||||||  ||||||| |||||||| |||||| | |||||  ||| |||||||||  | ||||| ||||||    
T  11005831 ggtagggacgctttttaatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaactt 11005732  T
Q  124 ttcgacatgtctttgccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgata 223  Q
    || || ||| |||| ||  ||| | | || |||||||||||| |||||||||||||| | || || |||||| | ||| ||||| |||||| |  ||| |    
T  11005731 ttagagatgccttttccatatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaa 11005632  T
Q  224 tagttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
     | ||||||||||||| |||||||||||||||||||||||    
T  11005631 caattgaaatatgggttatgaaagaatacaaagtgcattc 11005592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 263
Target Start/End: Complemental strand, 11015381 - 11015155
Alignment:
Q  37 tttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctt 136  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||| | |||||  ||| |||||||||  | ||||| |||||||| || |||  ||    
T  11015381 tttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcatt 11015282  T
Q  137 tgccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaatatg 236  Q
    | || |||| | | ||  ||||||||||| |||||||||||||| | || || |||||| | ||| ||||| ||||||||  ||  | ||||||||||||    
T  11015281 ttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatg 11015182  T
Q  237 ggtgatgaaagaatacaaagtgcattc 263  Q
    ||| |||||||||||||||||||||||    
T  11015181 ggttatgaaagaatacaaagtgcattc 11015155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 263
Target Start/End: Complemental strand, 11024393 - 11024167
Alignment:
Q  37 tttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctt 136  Q
    |||||||||| ||||||||||||  |||||||  |||||||||||||| | ||||| ||||||||||||||  | |||||  ||||||| || ||| |||    
T  11024393 tttaatgggaatattcattggttctcttttcgcaatgatttatcaatggatgttattattgcctttgatttagtggaaagggaacttttggagatgcctt 11024294  T
Q  137 tgccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaatatg 236  Q
    | || |||| | | || |||||||||||  |||||||||||||| | || || |||||| | ||| ||||| |||||| | |||  | | ||||||||||    
T  11024293 ttccagatggttttgatcatgaacctatggattgtgatttgtggatatttggagaatttctcagtctatgggctatggggggtgtaacaattgaaatatg 11024194  T
Q  237 ggtgatgaaagaatacaaagtgcattc 263  Q
    ||| |||||||||||||||||||||||    
T  11024193 ggttatgaaagaatacaaagtgcattc 11024167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 257
Target Start/End: Complemental strand, 47451793 - 47451570
Alignment:
Q  40 aatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctttgc 139  Q
    |||||| ||||| ||||||||||||||||||||||| |||| ||||| |||||   ||| |||||||| || ||||||||| |||| ||  ||  |||||    
T  47451793 aatggggctatttattggttggcttttcgtcatgatatatccatgaatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgc 47451694  T
Q  140 cggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatgg------agagtgatatagttgaaat 233  Q
    | |||||| | || ||||||||||   |||||| ||||||||| || || |||||| | ||| || ||  | |||      | | |||||||||||||||    
T  47451693 cagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaat 47451594  T
Q  234 atgggtgatgaaagaatacaaagt 257  Q
    ||||||||||||||||||||||||    
T  47451593 atgggtgatgaaagaatacaaagt 47451570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 4031811 - 4031711
Alignment:
Q  25 gtagggtcggtttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttt 124  Q
    ||||||||| |||||| |||  |||||||||||||||||||||||||||||||||| || || |||||| ||||||||||||| |  |||||||||||||    
T  4031811 gtagggtcgctttttagtggatctattcattggttggcttttcgtcatgatttatcgataaatgttatcgttgcctttgatttaacggaaagaaaacttt 4031712  T
Q  125 t 125  Q
    |    
T  4031711 t 4031711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 4962221 - 4962183
Alignment:
Q  225 agttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  4962221 agttgaaatatgggtgatgaaagaatacaaactgcattc 4962183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 4031631 - 4031590
Alignment:
Q  222 tatagttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  4031631 tatagttgaaatatgggttatgaaagaatacaaaatgcattc 4031590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 258
Target Start/End: Original strand, 15349244 - 15349275
Alignment:
Q  227 ttgaaatatgggtgatgaaagaatacaaagtg 258  Q
    ||||||||||||||||||||||||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtg 15349275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 179411 - 179459
Alignment:
Q  219 tgatatagttgaaatatgggtgatgaaagaatacaaagtgcattcatct 267  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  179411 tgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatct 179459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 9120116 - 9120160
Alignment:
Q  219 tgatatagttgaaatatgggtgatgaaagaatacaaagtgcattc 263  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  9120116 tgatacagttgaaatatgggtgatgaaagaatacaaagtgcattc 9120160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 42562034 - 42561993
Alignment:
Q  226 gttgaaatatgggtgatgaaagaatacaaagtgcattcatct 267  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  42562034 gttgatatatgggtgatgaaagaatacaaagtgcattcatct 42561993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 29696401 - 29696484
Alignment:
Q  40 aatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaactt 123  Q
    |||||| ||||||| ||||||||||||||| ||||| ||||||||   |||||  |||||||| |||| || ||||| ||||||    
T  29696401 aatggggctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaactt 29696484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 179218 - 179258
Alignment:
Q  35 tttttaatgggactattcattggttggcttttcgtcatgat 75  Q
    ||||||||||| |||||||||||||  ||||||||||||||    
T  179218 tttttaatggggctattcattggttctcttttcgtcatgat 179258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 9119923 - 9119963
Alignment:
Q  35 tttttaatgggactattcattggttggcttttcgtcatgat 75  Q
    |||| |||||| ||||||||||||| |||||||||||||||    
T  9119923 ttttcaatgggtctattcattggttcgcttttcgtcatgat 9119963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 219 - 261
Target Start/End: Original strand, 48884177 - 48884219
Alignment:
Q  219 tgatatagttgaaatatgggtgatgaaagaatacaaagtgcat 261  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  48884177 tgataaagttgaaatataggtgatgaaagaatacaaagtgcat 48884219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 24310570 - 24310610
Alignment:
Q  220 gatatagttgaaatatgggtgatgaaagaatacaaagtgca 260  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  24310570 gataaagttgatatatgggtgatgaaagaatacaaagtgca 24310610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 24416132 - 24416179
Alignment:
Q  220 gatatagttgaaatatgggtgatgaaagaatacaaagtgcattcatct 267  Q
    |||| |||||| ||||||||||||||||||||||||| ||| ||||||    
T  24416132 gatagagttgatatatgggtgatgaaagaatacaaagggcagtcatct 24416179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 24415925 - 24415986
Alignment:
Q  13 gattattctatggtagggtcggtttttaatgggactattcattggttggcttttcgtcatga 74  Q
    |||||| || |||||| |||||| || |||||| ||||||||||||| ||||| ||||||||    
T  24415925 gattatcctgtggtagagtcggtcttcaatggggctattcattggttagctttccgtcatga 24415986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 24310350 - 24310410
Alignment:
Q  15 ttattctatggtagggtcggtttttaatgggactattcattggttggcttttcgtcatgat 75  Q
    ||||||| |||||| ||| || || |||||| ||||||| ||||||||| |||||||||||    
T  24310350 ttattctgtggtagagtccgtcttcaatggggctattcactggttggctattcgtcatgat 24310410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 24323139 - 24323171
Alignment:
Q  235 tgggtgatgaaagaatacaaagtgcattcatct 267  Q
    |||||||||||||||||||||||||| ||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatct 24323171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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