View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9558_low_1 (Length: 684)

Name: NF9558_low_1
Description: NF9558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9558_low_1
NF9558_low_1
[»] chr3 (28 HSPs)
chr3 (203-642)||(43921810-43922245)
chr3 (201-590)||(11410595-11410983)
chr3 (251-585)||(21408766-21409105)
chr3 (230-444)||(26565353-26565570)
chr3 (309-478)||(10516137-10516308)
chr3 (309-478)||(10657410-10657580)
chr3 (309-532)||(27063706-27063931)
chr3 (488-618)||(26565195-26565321)
chr3 (287-418)||(14218478-14218611)
chr3 (18-89)||(43921678-43921749)
chr3 (488-592)||(27111148-27111249)
chr3 (401-509)||(2227286-2227394)
chr3 (19-89)||(11411043-11411112)
chr3 (489-636)||(14218319-14218464)
chr3 (287-355)||(49861114-49861181)
chr3 (489-624)||(17715999-17716134)
chr3 (489-624)||(19017228-19017363)
chr3 (396-446)||(27109772-27109822)
chr3 (19-83)||(27109091-27109155)
chr3 (488-522)||(26565319-26565353)
chr3 (287-353)||(27109285-27109350)
chr3 (396-446)||(27109374-27109424)
chr3 (372-453)||(49860462-49860544)
chr3 (117-150)||(43921759-43921792)
chr3 (10-55)||(49861316-49861361)
chr3 (476-528)||(27109420-27109472)
chr3 (287-335)||(27109683-27109730)
chr3 (549-605)||(44613363-44613419)
[»] chr8 (20 HSPs)
chr8 (155-667)||(18602887-18603384)
chr8 (309-612)||(28420931-28421231)
chr8 (287-632)||(15850417-15850748)
chr8 (310-585)||(15131941-15132212)
chr8 (309-621)||(1225937-1226246)
chr8 (321-632)||(44502161-44502469)
chr8 (401-574)||(37855088-37855257)
chr8 (433-629)||(27401696-27401888)
chr8 (201-276)||(15131827-15131905)
chr8 (18-56)||(15131746-15131784)
chr8 (18-72)||(18602826-18602880)
chr8 (334-478)||(18393548-18393693)
chr8 (117-150)||(18602885-18602918)
chr8 (401-481)||(2889799-2889879)
chr8 (401-481)||(3145256-3145336)
chr8 (402-481)||(3159848-3159927)
chr8 (117-148)||(15850280-15850311)
chr8 (18-83)||(27402646-27402711)
chr8 (317-406)||(44509327-44509416)
chr8 (401-481)||(2875444-2875524)
[»] chr6 (20 HSPs)
chr6 (309-636)||(1255633-1255961)
chr6 (309-632)||(12843773-12844093)
chr6 (309-596)||(14494411-14494695)
chr6 (230-587)||(17539932-17540287)
chr6 (372-641)||(19294244-19294510)
chr6 (287-617)||(56893-57208)
chr6 (395-624)||(34708806-34709031)
chr6 (287-535)||(19542100-19542350)
chr6 (422-632)||(34011237-34011443)
chr6 (422-601)||(34013438-34013613)
chr6 (18-83)||(34010949-34011014)
chr6 (10-84)||(17540368-17540442)
chr6 (488-566)||(12790569-12790643)
chr6 (18-83)||(34013836-34013901)
chr6 (18-84)||(14494180-14494246)
chr6 (333-617)||(2601975-2602255)
chr6 (309-387)||(34709064-34709142)
chr6 (309-352)||(34011176-34011219)
chr6 (309-352)||(34013631-34013674)
chr6 (18-55)||(19294695-19294732)
[»] chr2 (23 HSPs)
chr2 (309-641)||(26575930-26576251)
chr2 (384-641)||(32200870-32201124)
chr2 (362-641)||(9929492-9929768)
chr2 (309-628)||(27003909-27004228)
chr2 (309-601)||(34409553-34409844)
chr2 (401-617)||(13037193-13037405)
chr2 (18-83)||(17651605-17651670)
chr2 (437-587)||(41848934-41849080)
chr2 (316-474)||(44649945-44650106)
chr2 (403-511)||(4748147-4748255)
chr2 (18-83)||(41849343-41849408)
chr2 (309-349)||(9929799-9929839)
chr2 (309-353)||(13039025-13039069)
chr2 (311-352)||(32200816-32200857)
chr2 (436-532)||(17651225-17651321)
chr2 (20-80)||(34409326-34409386)
chr2 (550-596)||(4748269-4748315)
chr2 (18-56)||(32200622-32200660)
chr2 (412-481)||(16661253-16661322)
chr2 (18-55)||(26576429-26576466)
chr2 (467-535)||(40279811-40279877)
chr2 (309-351)||(15990040-15990082)
chr2 (18-54)||(4747829-4747865)
[»] chr5 (6 HSPs)
chr5 (287-641)||(32676586-32676929)
chr5 (422-642)||(40837666-40837882)
chr5 (201-418)||(40837983-40838202)
chr5 (322-504)||(38989237-38989418)
chr5 (519-585)||(41815795-41815856)
chr5 (598-642)||(39732278-39732322)
[»] chr1 (18 HSPs)
chr1 (204-632)||(23431736-23432168)
chr1 (287-629)||(32740723-32741058)
chr1 (309-642)||(9148971-9149298)
chr1 (372-498)||(18476506-18476634)
chr1 (309-513)||(48632554-48632760)
chr1 (309-579)||(7021540-7021811)
chr1 (317-427)||(126323-126435)
chr1 (333-532)||(3387621-3387821)
chr1 (538-641)||(10171647-10171744)
chr1 (332-482)||(3954966-3955117)
chr1 (422-512)||(125163-125253)
chr1 (437-623)||(16426311-16426493)
chr1 (287-351)||(18488357-18488420)
chr1 (21-55)||(23432247-23432281)
chr1 (18-55)||(48632335-48632372)
chr1 (523-622)||(30883216-30883309)
chr1 (201-240)||(48632448-48632486)
chr1 (17-83)||(30882700-30882766)
[»] chr4 (14 HSPs)
chr4 (309-636)||(45612411-45612731)
chr4 (287-498)||(17732773-17732986)
chr4 (201-514)||(40289015-40289330)
chr4 (402-641)||(54305517-54305752)
chr4 (288-465)||(31734528-31734703)
chr4 (422-612)||(55680627-55680813)
chr4 (456-630)||(658541-658711)
chr4 (309-391)||(3419960-3420042)
chr4 (18-83)||(55681036-55681101)
chr4 (536-587)||(35529482-35529534)
chr4 (598-641)||(40289878-40289921)
chr4 (18-83)||(658207-658272)
chr4 (18-55)||(54305986-54306023)
chr4 (565-641)||(31734419-31734495)
[»] chr7 (22 HSPs)
chr7 (287-535)||(37338714-37338962)
chr7 (309-622)||(46532734-46533044)
chr7 (201-641)||(27616186-27616615)
chr7 (480-642)||(44572561-44572715)
chr7 (203-355)||(10678437-10678590)
chr7 (312-532)||(32716489-32716709)
chr7 (372-585)||(22290779-22290989)
chr7 (373-494)||(45215999-45216121)
chr7 (549-642)||(45216124-45216215)
chr7 (21-84)||(22291163-22291226)
chr7 (500-601)||(10678241-10678338)
chr7 (363-429)||(44572492-44572559)
chr7 (401-531)||(44182664-44182794)
chr7 (398-532)||(27993868-27994002)
chr7 (17-55)||(46533220-46533258)
chr7 (604-641)||(10678212-10678249)
chr7 (410-447)||(10678398-10678435)
chr7 (19-52)||(10678671-10678704)
chr7 (18-55)||(44572289-44572326)
chr7 (18-55)||(45215802-45215839)
chr7 (600-632)||(8799628-8799660)
chr7 (204-276)||(45215885-45215960)
[»] scaffold0325 (1 HSPs)
scaffold0325 (327-586)||(12794-13051)
[»] scaffold0019 (1 HSPs)
scaffold0019 (309-596)||(70042-70329)
[»] scaffold1723 (1 HSPs)
scaffold1723 (403-482)||(404-483)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 203 - 642
Target Start/End: Original strand, 43921810 - 43922245
Alignment:
Q  203 acactcctaggaccggtgtccgacacctataacactcatcgaactgtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgcttccaca 302  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  43921810 acactcctaggaccggtgtccgacacctataacactcatcgaaccgtttcggacaactcagacaaatatctaaagcatttttttctctcttgcttccaca 43921909  T
Q  303 tacggttagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atgg 401  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||      
T  43921910 tacagt-agatacaagagttacatatgttttgagaaatgttgatcaatcagggttaattgacattacaattgattataacatttttagcttttttgatat 43922008  T
Q  402 tagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcat 501  Q
    ||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  43922009 tagatgaataaataaagatcaaatactacgatgtcttgttttagaactttttctaatgaaataacttgctcaagttagatgtttggatatgtatttttat 43922108  T
Q  502 tttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcag 601  Q
    |||||| ||||||| ||||||||||||||||||||    ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  43922109 tttcatgttagaccatatataaataaattaacatg----tatgtagaggtgtcggtgtcctatattttttacactagcggtgtcgaagtgtccgtgtcag 43922204  T
Q  602 tgtcgtatcaggtgtccgtgtcggagtccatacttgatagg 642  Q
    |||||| |||||| || |||||||||||||| ||| |||||    
T  43922205 tgtcgtgtcaggtatctgtgtcggagtccatgcttcatagg 43922245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 201 - 590
Target Start/End: Complemental strand, 11410983 - 11410595
Alignment:
Q  201 cgacactcctaggaccggtgtccgacacctata--acactcat-cgaactgtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgctt 297  Q
    |||||||||||||||||||||| ||||||||||  |||||||| ||| |  | || ||||||| |  |||||||| ||| ||       ||||||| |||    
T  11410983 cgacactcctaggaccggtgtc-gacacctatataacactcatacgagccatgtcagacaacttatgcaaatatcgaaaacatttttttctctcttactt 11410885  T
Q  298 ccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattagggt-taattgacattacaattgattataacatttttagcttctt 396  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||  |||| || ||||   |||||||||||| ||||||| | ||    
T  11410884 ccacataccgt-agatacaagagttacatatgttttgagaaatgttgatcaattagggggtaatagatattattgttgattataacagttttagcctttt 11410786  T
Q  397 t-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtat 495  Q
    | || |||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  11410785 tgatagtagatgaataaataaaggttaaatactacgatatcttcttttagaactttttctaatgaaataacttgctcaagttagatgcttaaatatgtat 11410686  T
Q  496 tttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagt 590  Q
    ||| ||||||||||||||||||||||||||||||||||    |||||||| | |||||||||||||||||| ||||||| |||||||||| ||||    
T  11410685 tttgattttcattttagaccgtatataaataaattaac----atatatgtagcggtgtcggtgtcctatatattttacactagcggtgtcaaagt 11410595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 251 - 585
Target Start/End: Original strand, 21408766 - 21409105
Alignment:
Q  251 tcggacaactcagacaaatatctaaagcannnnnnnctctcttgcttccacatacggttagatacaagagttacatatgt--------tttgagaaatgt 342  Q
    |||||||||||| ||||||||||||| ||       ||||||||||||||||||   |||||||||||||||||||||||        ||||||||||||    
T  21408766 tcggacaactcaaacaaatatctaaaacatttttttctctcttgcttccacataac-ttagatacaagagttacatatgtacatatgttttgagaaatgt 21408864  T
Q  343 tgatcaattagggt-taattgacattacaattgattataacatttttagc-ttctttatggtagatgaataaataaagataaaatactacgatatcttgt 440  Q
    |||||||||||||  |||   ||||||||||||||||||||||||||| | || ||||| |||||||||||||||||| | ||||||||||||||||| |    
T  21408865 tgatcaattagggggtaacaaacattacaattgattataacatttttaaccttttttatagtagatgaataaataaaggtcaaatactacgatatcttat 21408964  T
Q  441 tttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaacatgtata 540  Q
    ||||||  |||||||||||||||||||||||||| ||||||  ||| || |||||||| ||||||||||||||||||||||||||||||||||    |||    
T  21408965 tttagaattttttctaatgaaataacttgctcaaattagattcttatatttgtattttgattttcattttagaccgtatataaataaattaac----ata 21409060  T
Q  541 tatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtc 585  Q
    ||||| | |||||| || |||||||||||||||| || |||||||    
T  21409061 tatgtagcggtgtcagtatcctatattttttacattaacggtgtc 21409105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 230 - 444
Target Start/End: Complemental strand, 26565570 - 26565353
Alignment:
Q  230 tataacactcat-cgaactgtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgcttccacatacggttagatacaagagttacatat 328  Q
    |||||||||||| ||| | || |||||||||||||||||||||||||| ||       ||||||||||||||||||   ||||||| |||||||||||||    
T  26565570 tataacactcatacgagccgtgtcggacaactcagacaaatatctaaaacatttttttctctcttgcttccacatatc-ttagatataagagttacatat 26565472  T
Q  329 gttttgagaaatgttgatcaattaggg-ttaattgacattacaattgattataacatttttagc--ttctttatggtagatgaataaataaagataaaat 425  Q
    ||||| |||||||||||||| ||||||  |||| ||||||||| || |||||||||||||||||  || || | |||| ||||  |||||||||| ||||    
T  26565471 gtttttagaaatgttgatcatttagggagtaatagacattacagttaattataacatttttagccttttttgacggtaaatgagaaaataaagatcaaat 26565372  T
Q  426 actacgatatcttgtttta 444  Q
    |||||||||||||||||||    
T  26565371 actacgatatcttgtttta 26565353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 309 - 478
Target Start/End: Original strand, 10516137 - 10516308
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggt-taattgacattacaattgattataacatttttagcttcttt-atggtagat 406  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||  ||||  |||||| |  | ||||||||||||||| | | ||| || | || |    
T  10516137 tagatacaagagttacatatgttttaaaaaatgttaatcaattagggggtaatatacattatagcttattataacatttttaacctttttgataggagtt 10516236  T
Q  407 gaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagtta 478  Q
    |||||||||| | | ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  10516237 gaataaataatggtcaaatactacgatatcttattttagaactttttctaatgaaataacttgctcaagtta 10516308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 309 - 478
Target Start/End: Original strand, 10657410 - 10657580
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattag-ggttaattgacattacaattgattataacatttttagcttctttatggtagatg 407  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| || |||   ||||||||  ||||||||||||||||| ||| |||   | || ||    
T  10657410 tagatacaagatttacatatgttttgaaaaatgttgatcaattagaggctaaaatacattacatatgattataacatttttaacttttttgaaggagttg 10657509  T
Q  408 aataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagtta 478  Q
    ||||||||||| | ||||  ||||||||||||||||||| ||||||||||| ||||||||| || ||||||    
T  10657510 aataaataaaggtcaaattatacgatatcttgttttagaactttttctaataaaataacttacttaagtta 10657580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 309 - 532
Target Start/End: Complemental strand, 27063931 - 27063706
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaatt-agggttaattgacattacaattgattataacatttttagcttctttatg---gtag 404  Q
    |||||| ||||||||||||| | |||||||||||||||||||| |||  | || || |||  | || |||| ||||||||||||||  |||||   ||||    
T  27063931 tagatataagagttacatatatgttgagaaatgttgatcaatttaggagttatagaaatttaagttaattacaacatttttagctt--ttatgacagtag 27063834  T
Q  405 atgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcatttt 504  Q
    |||||||||||||| | | ||| || | |||||||||||||| | |||| ||| |||||||  ||||||||||||||| ||| |||||| |||| ||| |    
T  27063833 atgaataaataaaggtcatatattatggtatcttgttttagaacgttttttaaagaaataaactgctcaagttagatgcttaaatatgtgttttgattat 27063734  T
Q  505 cattttagaccgtatataaataaattaa 532  Q
    ||||||||||||| ||||||||||||||    
T  27063733 cattttagaccgtctataaataaattaa 27063706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 488 - 618
Target Start/End: Complemental strand, 26565321 - 26565195
Alignment:
Q  488 atatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcga 587  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||    ||||||   |||||| ||||||| ||||||||||| ||||||||||||    
T  26565321 atatgtattttgattttcattttagaccatatataaataaattaacat----atatgtaacggtgtcagtgtcctgtattttttacattagcggtgtcga 26565226  T
Q  588 agtatccgtatcagtgtcgtatcaggtgtcc 618  Q
    ||| ||||| |||||||||| ||||||||||    
T  26565225 agtgtccgtgtcagtgtcgtgtcaggtgtcc 26565195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 287 - 418
Target Start/End: Complemental strand, 14218611 - 14218478
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaatta-gggttaattgacattacaattgattataacatt 385  Q
    ||||||||||||||||||| || ||| |||||||| |||||| |||||| |||||||||||||||| ||| |||| ||||||||| ||||||||||||||    
T  14218611 ctctcttgcttccacataccgt-agacacaagagtcacatatattttgataaatgttgatcaattagggggtaatagacattacagttgattataacatt 14218513  T
Q  386 tttag--cttctttatggtagatgaataaataaag 418  Q
    |||||   || ||||| |||||| |||||||||||    
T  14218512 tttagtttttttttatagtagataaataaataaag 14218478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 43921678 - 43921749
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacacctgtct 89  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  43921678 gacacctctaggactagccgtgtcacggtgtccgacacgcttcggtgtccgacactcctatgacacttgtct 43921749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 488 - 592
Target Start/End: Original strand, 27111148 - 27111249
Alignment:
Q  488 atatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatatttttt-acaatagcggtgtcg 586  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||    ||||||   ||||||||||||||||||||||| ||| ||||||||||     
T  27111148 atatgtattttgattttcattttagaccgtttataaataaattaacat----atatgtaatggtgtcggtgtcctatattttttaacactagcggtgtca 27111243  T
Q  587 aagtat 592  Q
    ||||||    
T  27111244 aagtat 27111249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 401 - 509
Target Start/End: Original strand, 2227286 - 2227394
Alignment:
Q  401 gtagatgaataaataaagataaaatactacgatatcttgttttagagctttttc-taatgaaataacttgctcaagttagatgtttagatatgtattttc 499  Q
    |||||||||||||||||| | |||||||| || |||||||| |||| ||||||| |||||| | || ||||||||||||||| |||| |||||||||||     
T  2227286 gtagatgaataaataaaggtcaaatactatgacatcttgttgtagaactttttcttaatgacacaa-ttgctcaagttagatatttatatatgtatttta 2227384  T
Q  500 attttcattt 509  Q
     |||||||||    
T  2227385 gttttcattt 2227394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 11411112 - 11411043
Alignment:
Q  19 acacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacacctgtct 89  Q
    ||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||| |||||||| |||||    
T  11411112 acacctctaagactagccgtgtcgcggagtccgacacgcgtc-gtgtccgacactcctatgacacttgtct 11411043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 636
Target Start/End: Complemental strand, 14218464 - 14218319
Alignment:
Q  489 tatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaa 588  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||  |||| |||| |  ||||| | ||||||||| ||||||| || | ||| ||||    
T  14218464 tatgtattttgattttcattttagatcttatataaataaattaaca--tatacatgtagcagtgtcagagtcctatatcttttacactaacagtgccgaa 14218367  T
Q  589 gtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtccatactt 636  Q
    || ||  ||||| | | || | |||||||  |||||||||||||||||    
T  14218366 gtgtctatatcaatattgtgtaaggtgtcaatgtcggagtccatactt 14218319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 49861181 - 49861114
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattaggg 355  Q
    |||||||||||| ||| || || |||||||||||||||||| ||||||||| |||||||||||||||||    
T  49861181 ctctcttgcttctacacaccgt-agatacaagagttacataagttttgagatatgttgatcaattaggg 49861114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 489 - 624
Target Start/End: Original strand, 17715999 - 17716134
Alignment:
Q  489 tatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcga- 587  Q
    |||||||||| |||| |||||||||   ||| |||||||||||    |||||||||| | |||||| |||||||||||| |||||| ||||||||||||     
T  17715999 tatgtattttgatttgcattttagat--tatctaaataaatta----gtatatatgtagcggtgtcagtgtcctatattatttacattagcggtgtcgac 17716092  T
Q  588 -----agtatccgtatcagtgtcgtatcaggtgtccgtgtcg 624  Q
          || |||||||||||||||| ||||||||| ||||||    
T  17716093 atgtccgtgtccgtatcagtgtcgtgtcaggtgtctgtgtcg 17716134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 489 - 624
Target Start/End: Original strand, 19017228 - 19017363
Alignment:
Q  489 tatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcga- 587  Q
    |||||||||| |||| |||||||||   ||| |||||||||||    |||||||||| | |||||| |||||||||||| |||||| ||||||||||||     
T  19017228 tatgtattttgatttgcattttagat--tatctaaataaatta----gtatatatgtagcggtgtcagtgtcctatattatttacattagcggtgtcgac 19017321  T
Q  588 -----agtatccgtatcagtgtcgtatcaggtgtccgtgtcg 624  Q
          || |||||||||||||||| ||||||||| ||||||    
T  19017322 atgtccgtgtccgtatcagtgtcgtgtcaggtgtctgtgtcg 19017363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 27109772 - 27109822
Alignment:
Q  396 ttatggtagatgaataaataaagataaaatactacgatatcttgttttaga 446  Q
    |||| |||||||||||||||||||| ||||||||| |||||||||||||||    
T  27109772 ttatagtagatgaataaataaagatcaaatactacaatatcttgttttaga 27109822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 27109091 - 27109155
Alignment:
Q  19 acacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacac 83  Q
    ||||||||| | ||||| || ||||||||||||||| || |||||||||| |||| |||||||||    
T  27109091 acacctctaaggctagcagtatcgcggtgtccgacatgcgtcggtgtccggcacttttatgacac 27109155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 522
Target Start/End: Complemental strand, 26565353 - 26565319
Alignment:
Q  488 atatgtattttcattttcattttagaccgtatata 522  Q
    |||||||||||||||||||||||||| ||||||||    
T  26565353 atatgtattttcattttcattttagatcgtatata 26565319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 27109285 - 27109350
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattag 353  Q
    |||||||||||| ||| || || | ||||||| ||||||||||||||| || |||||||||||||||    
T  27109285 ctctcttgcttctacacaccgtaa-atacaagggttacatatgttttgtgatatgttgatcaattag 27109350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 27109374 - 27109424
Alignment:
Q  396 ttatggtagatgaataaataaagataaaatactacgatatcttgttttaga 446  Q
    |||| |||||||||||||||||  | |||||||||||| ||||||||||||    
T  27109374 ttatagtagatgaataaataaatgtcaaatactacgatttcttgttttaga 27109424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 453
Target Start/End: Complemental strand, 49860544 - 49860462
Alignment:
Q  372 ttgattataacatttttagcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagcttttt 453  Q
    |||||||||| ||||||||||  ||| || |||||| ||||||||||  | |||||| || ||||||||||||||| ||||||    
T  49860544 ttgattataagatttttagctcttttgatagtagataaataaataaatgtcaaataccactatatcttgttttagaacttttt 49860462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 43921792 - 43921759
Alignment:
Q  117 caattttatttaggacaccgattttagttgtccg 150  Q
    ||||||||| ||||||||||||||||||||||||    
T  43921792 caattttatctaggacaccgattttagttgtccg 43921759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 49861361 - 49861316
Alignment:
Q  10 gaagcagagacacctctaggactagccgtgtcgcggtgtccgacac 55  Q
    |||||| ||||||||||||||||||  |||||||||| ||||||||    
T  49861361 gaagcacagacacctctaggactaggggtgtcgcggtttccgacac 49861316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 27109420 - 27109472
Alignment:
Q  476 ttagatgtttagatatgtattttcattttcattttagaccgtatataaataaa 528  Q
    ||||||| ||| ||||||||||| ||||| |||||||||||| | ||||||||    
T  27109420 ttagatgcttatatatgtatttttatttttattttagaccgtctgtaaataaa 27109472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 27109683 - 27109730
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttga 335  Q
    |||||||||||||||| || || | ||||||||||||||||||||||||    
T  27109683 ctctcttgcttccacacaccgtaa-atacaagagttacatatgttttga 27109730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 549 - 605
Target Start/End: Original strand, 44613363 - 44613419
Alignment:
Q  549 ggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtc 605  Q
    |||||||||||||||||||||| ||| |||| ||||||  |||||||| || |||||    
T  44613363 ggtgtcggtgtcctatatttttgacattagcagtgtcgtcgtatccgtgtcggtgtc 44613419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 155 - 667
Target Start/End: Original strand, 18602887 - 18603384
Alignment:
Q  155 gacaactaaaatccgtgtcc-aaataaaattgnnnnnnnctttgatccgacactcctaggaccggtgtccgacacctataacactcatcgaactgtttcg 253  Q
    ||||||||||||| |||||| |||||||||||       ||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  18602887 gacaactaaaatcggtgtcctaaataaaattgtttttttctttgattcgacactcctaagaccggtgtccgacacctataaaactcatcgaactgtttcg 18602986  T
Q  254 gacaactcagacaaatatctaaagcannnnnnnctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattag 353  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  18602987 gacaactcagacaaatatctaaagcatttttttctctcttgcttccacatacggtatgatacaagagttacatatgttttgagaaatgttgatcaattag 18603086  T
Q  354 ggttaattgacattacaattgattataacatttttagcttctttatggtagatgaataaataaagataaaatactacgatatcttgttttagagcttttt 453  Q
    ||| |||||||||||||||||||||||||||||||||||| |||            ||||||||||| ||||||||||||||| ||||||| | ||||||    
T  18603087 ggtgaattgacattacaattgattataacatttttagctttttt------------taaataaagatcaaatactacgatatcgtgttttaaaacttttt 18603174  T
Q  454 ctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgt 553  Q
    |||||||||||||||||| |||||||||||||||||||||||||  ||||| |||||||||   |||||||||||||||||||    ||||| ||||||     
T  18603175 ctaatgaaataacttgcttaagttagatgtttagatatgtatttggatttttattttagacatgatataaataaattaacatg----tatgtagaggtgc 18603270  T
Q  554 cggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtccatacttgatagggtagaacccta 653  Q
    ||||||||||||||||||||| || |||||||||||| || || ||| |   |||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  18603271 cggtgtcctatattttttacactaacggtgtcgaagtgtctgtgtcaatactgtatcaggtgtctgtgtcggagtccatgcttcatagggtagaacccta 18603370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 309 - 612
Target Start/End: Complemental strand, 28421231 - 28420931
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatg 407  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| | | || ||||||| | ||||||||| | |||||||||| ||| || |||||||    
T  28421231 tagatacaagagttacatatattttgagaaatcttgatcaattagtggttatagacattatagttgattatatcgtttttagcttttttgatagtagatg 28421132  T
Q  408 aataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcat 507  Q
    ||||||||||| | ||||  || ||||||||||| || | ||||||||||||| |||| |||||||||||| ||||||| ||||||||||| ||||||||    
T  28421131 aataaataaaggtcaaatcatatgatatcttgttgtaaaactttttctaatgacataaattgctcaagttaaatgtttatatatgtattttaattttcat 28421032  T
Q  508 tttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgt 607  Q
    |||||||||| | |||||||||||||||    ||||||   ||||||||||||||||||||| |||| |||||||||| | || ||| | ||||||||||    
T  28421031 tttagaccgtctttaaataaattaacat----atatgtaatggtgtcggtgtcctatattttctacattagcggtgtcaacgtgtccatgtcagtgtcgt 28420936  T
Q  608 atcag 612  Q
    |||||    
T  28420935 atcag 28420931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 287 - 632
Target Start/End: Original strand, 15850417 - 15850748
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattagg-gttaattgacattacaattgattataacatt 385  Q
    ||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||| | || | | || |||||           ||||||||    
T  15850417 ctctcttgcttccacattccgt-agatacaagagttacatatgttttgaaaaatgttgatcaactgggaggttatagacat-----------ataacatt 15850504  T
Q  386 tttagcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtt 484  Q
    |||||||| ||| || |||||||||||||||||  | |||||||  |||||||||||||| | |||||||||||||||||| |||||||| ||||||  |    
T  15850505 tttagcttttttgatagtagatgaataaataaatgtcaaatactgtgatatcttgttttataactttttctaatgaaataatttgctcaaattagatact 15850604  T
Q  485 tagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgt 584  Q
    || ||||||||||| |||||||||||||||  | ||||||||||||||    ||||||  |   |||||||||||||||||||||||||| || | ||||    
T  15850605 tatatatgtattttgattttcattttagactatctataaataaattaa----tatatacataatggtgtcggtgtcctatattttttacactaacagtgt 15850700  T
Q  585 cgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtccat 632  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  15850701 cgaagtgtccatatcagtgtcgtgtcaggtgtccgtgtcggagtccat 15850748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 310 - 585
Target Start/End: Original strand, 15131941 - 15132212
Alignment:
Q  310 agatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttctt-tatggtagatga 408  Q
    ||||||| |||||||||||||||| |||||| |||||||||||||| | || ||||||| | ||||||||| |||||||||||| ||  || |||||| |    
T  15131941 agatacaggagttacatatgtttttagaaatattgatcaattaggggttatagacattatagttgattatatcatttttagctttttcgatagtagataa 15132040  T
Q  409 ataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcatt 508  Q
    |||||||||||| |||||||| ||||||||| | |||| |||||| | ||| ||||| ||||||||||||||||| || ||||||||||| |||||||||    
T  15132041 ataaataaagatcaaatactatgatatcttgctgtagaactttttatcatg-aataaattgctcaagttagatgtctatatatgtattttaattttcatt 15132139  T
Q  509 ttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtc 585  Q
    ||| || || | | |||||||||||    |||||||| | ||||| |||||||||||| ||||||| ||||||||||    
T  15132140 ttaaactgtctttgaataaattaac----atatatgtagcggtgttggtgtcctatatattttacattagcggtgtc 15132212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 309 - 621
Target Start/End: Complemental strand, 1226246 - 1225937
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattag-ggttaattgacattacaattgattataacatttttagcttctttatggtagatg 407  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||| |||| || || |||| | ||||||| ||||||||||  || || || |||||||    
T  1226246 tagatacaagagttaaatatgtgttgagaaatgttaatcaattagaggtttatagaaattaaagttgattacaacatttttaaatttttgatagtagatg 1226147  T
Q  408 aataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcat 507  Q
    ||||||||||||| |||||||  | |||||||||||| | ||||||  |||||||||| ||||| || ||| ||||||| ||||||||||| ||||||||    
T  1226146 aataaataaagatcaaatactctggtatcttgttttataacttttttcaatgaaataaattgcttaatttatatgtttacatatgtattttgattttcat 1226047  T
Q  508 tttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgt 607  Q
    |||||||| | |||||||||||||     ||||||||| | |||||| ||||| || || ||||| | ||  |||||||| || ||||||| | ||||||    
T  1226046 tttagaccctctataaataaatta----ctatatatgtggtggtgtcagtgtcgtaaatattttatattaatggtgtcgacgtgtccgtattaatgtcgt 1225951  T
Q  608 atcaggtgtccgtg 621  Q
     |||||||||||||    
T  1225950 gtcaggtgtccgtg 1225937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 321 - 632
Target Start/End: Complemental strand, 44502469 - 44502161
Alignment:
Q  321 ttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatgaataaataaaga 419  Q
    ||||||||||||||||||||||||||  ||||||| | || ||||||| | |||||||||  ||||||| ||| ||| || | ||||||||||||||||     
T  44502469 ttacatatgttttgagaaatgttgattgattaggggttatagacattatagttgattatattatttttaacttttttgatagcagatgaataaataaagg 44502370  T
Q  420 taaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtat 519  Q
    | ||||| || ||||||||||| |||| |||||| | ||||||||| |||||||||||| ||||||| ||||||||| |  ||||| ||||||||  | |    
T  44502369 tcaaatagtatgatatcttgttgtagaactttttatgatgaaataaattgctcaagttaaatgtttatatatgtattctatttttcgttttagactttct 44502270  T
Q  520 ataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccg 619  Q
     ||||||||||||     ||||||||    ||||||||||||||||||||||||| ||||  |||||| |  || ||||||||||||| | |||||||||    
T  44502269 ttaaataaattaa----aatatatgtaacagtgtcggtgtcctatattttttacattagcaatgtcgacgcgtctgtatcagtgtcgtgttaggtgtccg 44502174  T
Q  620 tgtcggagtccat 632  Q
    | ||||| |||||    
T  44502173 tatcggaatccat 44502161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 401 - 574
Target Start/End: Complemental strand, 37855257 - 37855088
Alignment:
Q  401 gtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttca 500  Q
    |||||||||||||||||| | ||||||||  ||||||||||  | | |||||||| ||||||||| || ||||| ||||||||||| ||||||||| | |    
T  37855257 gtagatgaataaataaaggttaaatactattatatcttgttgcataactttttctcatgaaataaatttctcaaattagatgtttatatatgtattataa 37855158  T
Q  501 ttttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttaca 574  Q
    |||| |||||||||||| | ||||||||| |||    |||||||| | ||||||||||||||||||||||||||    
T  37855157 tttttattttagaccgtctttaaataaatgaac----atatatgtagcggtgtcggtgtcctatattttttaca 37855088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 629
Target Start/End: Complemental strand, 27401888 - 27401696
Alignment:
Q  433 tatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaa 532  Q
    ||||||||| || | |||||| ||||||||||| ||||||||||||||||   |  ||| |||||| ||| ||| || ||||  | ||||||||||||||    
T  27401888 tatcttgttatataactttttttaatgaaataaattgctcaagttagatgcagatgtatatattttgattctcaattgagacattttataaataaattaa 27401789  T
Q  533 catgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtc 629  Q
     || || |||    | ||| | || ||||||| ||||||||| ||||||||| |  || ||||| |||||||| ||||||||||||||||| |||||    
T  27401788 tatatagata----gcggtattggcgtcctatgttttttacattagcggtgttggcgtgtccgtgtcagtgtcctatcaggtgtccgtgtcagagtc 27401696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 15131827 - 15131905
Alignment:
Q  201 cgacactcctaggaccggtgtccgacacc--tataacactcat-cgaactgtttcggacaactcagacaaatatctaaa 276  Q
    ||||||||||| |||||||||||||||||  ||||||||||||  || | || ||| ||||||||||||||||||||||    
T  15131827 cgacactcctacgaccggtgtccgacacctatataacactcatatgagcagtgtcgaacaactcagacaaatatctaaa 15131905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 15131746 - 15131784
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacg 56  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  15131746 gacacctctaggactaggcgtgtcgcggtgtccgacacg 15131784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 18602826 - 18602880
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacac 72  Q
    |||| ||||||||||||| ||||| ||||||||||||||||| |||||| |||||    
T  18602826 gacatctctaggactagctgtgtcacggtgtccgacacgctttggtgtctgacac 18602880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 478
Target Start/End: Original strand, 18393548 - 18393693
Alignment:
Q  334 gagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatgaataaataaagataaaatactacga 432  Q
    ||||||||||||||||| | || | || ||||||| | ||||||| ||| ||||||  || ||| || ||||||| |||||||||| | ||||||||       
T  18393548 gagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaattttttgatagtagatggataaataaaggtcaaatactattt 18393647  T
Q  433 tatcttgttttagagctttttctaatgaaataacttgctcaagtta 478  Q
    ||||||||| || | |||||| |||| |||||| ||| ||||||||    
T  18393648 tatcttgttataaaactttttttaataaaataaattgttcaagtta 18393693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 18602918 - 18602885
Alignment:
Q  117 caattttatttaggacaccgattttagttgtccg 150  Q
    ||||||||||||||||||||||||||||||||||    
T  18602918 caattttatttaggacaccgattttagttgtccg 18602885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 481
Target Start/End: Original strand, 2889799 - 2889879
Alignment:
Q  401 gtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagat 481  Q
    ||||||| ||||||||||   ||||||||   ||||||||| |||| |||||| ||||||||||| |||||||||| ||||    
T  2889799 gtagatggataaataaaggccaaatactattgtatcttgttatagacctttttttaatgaaataaattgctcaagtaagat 2889879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 481
Target Start/End: Complemental strand, 3145336 - 3145256
Alignment:
Q  401 gtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagat 481  Q
    ||||||| ||||||||||   ||||||||   ||||||||| |||| |||||| ||||||||||| |||||||||| ||||    
T  3145336 gtagatggataaataaaggccaaatactattgtatcttgttatagacctttttttaatgaaataaattgctcaagtaagat 3145256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 481
Target Start/End: Complemental strand, 3159927 - 3159848
Alignment:
Q  402 tagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagat 481  Q
    |||||| ||||||||||   ||||||||   || |||||| |||| |||||| ||||||||||| |||||||||||||||    
T  3159927 tagatggataaataaaggccaaatactattgtaacttgttatagacctttttttaatgaaataaattgctcaagttagat 3159848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 148
Target Start/End: Complemental strand, 15850311 - 15850280
Alignment:
Q  117 caattttatttaggacaccgattttagttgtc 148  Q
    ||||||||||||||||||||||||||||||||    
T  15850311 caattttatttaggacaccgattttagttgtc 15850280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 27402711 - 27402646
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacac 83  Q
    ||||||||||||| ||| ||||| | |||||| ||||||  |||||||||||||||| | ||||||    
T  27402711 gacacctctaggattaggcgtgttgtggtgtctgacacgtgtcggtgtccgacactcctttgacac 27402646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 406
Target Start/End: Complemental strand, 44509416 - 44509327
Alignment:
Q  317 agagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttctttatggtagat 406  Q
    ||||||||||||||||| |||||| ||||| |||||||  | || |||||||  ||||||||||  || |||| ||| ||||| ||||||    
T  44509416 agagttacatatgttttaagaaatattgattaattaggagttatagacattattattgattatattatgtttaacttttttatagtagat 44509327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 401 - 481
Target Start/End: Original strand, 2875444 - 2875524
Alignment:
Q  401 gtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagat 481  Q
    ||||||| ||||||||||   ||||||||   ||||||||| || | |||||| ||||||| ||| |||||||||||||||    
T  2875444 gtagatggataaataaaggccaaatactattgtatcttgttataaacctttttttaatgaactaaattgctcaagttagat 2875524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 309 - 636
Target Start/End: Original strand, 1255633 - 1255961
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggt-taattgacattacaattgattataacatttttagcttcttt-atggtagat 406  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||||  | || ||||||||| |||||||||||||||||||||| ||| || | ||||    
T  1255633 tagatacaagagctacataggttttgaggaatgttgatcaattagggggttatagacattacagttgattataacatttttagcttttttgatagcagat 1255732  T
Q  407 gaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttca 506  Q
      |||||||||  | ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||| ||||||||||| |||||||    
T  1255733 acataaataaatgtcaaatactacgatatcttgttttagaactttttctaataaaataacttgctcaagttaaatgcttatatatgtattttgattttca 1255832  T
Q  507 ttttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcg 606  Q
    ||||||||||| || |||||||||||||| ||| || || | ||||||||||||| |||||||||||| || | ||||||||||||| || ||||| |||    
T  1255833 ttttagaccgtctacaaataaattaacatatatgta-gtagcggtgtcggtgtcccatattttttacactaacagtgtcgaagtatctgtgtcagtatcg 1255931  T
Q  607 tatcaggtgtccgtgtcggagtccatactt 636  Q
    ||||||||||| ||||   |||||||||||    
T  1255932 tatcaggtgtctgtgttaaagtccatactt 1255961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 309 - 632
Target Start/End: Complemental strand, 12844093 - 12843773
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||||| | ||||||||| |||||||||||| ||| || |||||||    
T  12844093 tagatacaagagttacatatgttttgagaaatgttgatcaattaggggttatacacattatagttgattatatcatttttagcttttttgatagtagatg 12843994  T
Q  408 aataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcat 507  Q
    ||||||||||| | |||||||| |||||||| || |||| ||| |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  12843993 aataaataaaggtcaaatactatgatatcttattgtagaacttgttctaatgaaatatattgctcaagttagatgtttatatatgtattttcattttcat 12843894  T
Q  508 tttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgt 607  Q
    |||||||||| | |||||||||||||||    |||||| |  ||||  ||||||||||||| ||| | |||| ||||||| || |  || ||||||||||    
T  12843893 tttagaccgtctttaaataaattaacat----atatgtagcagtgttagtgtcctatatttgttatattagcagtgtcgacgtgtttgtgtcagtgtcgt 12843798  T
Q  608 atcaggtgtccgtgtcggagtccat 632  Q
     ||| ||||||||||||||||||||    
T  12843797 gtcaagtgtccgtgtcggagtccat 12843773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 309 - 596
Target Start/End: Original strand, 14494411 - 14494695
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatg 407  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| | || ||||| | | ||||||||| |||||||| ||| ||| ||  |||| |    
T  14494411 tagatacaagaattacatatgttttgagaaatgttgatcaattaggggttatagacatcatagttgattatatcatttttaacttttttgataatagacg 14494510  T
Q  408 aataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcat 507  Q
    ||||||||||| | |||||||| ||||| ||||| |||| |||||||||||||||||| ||||| ||| |||||||||| ||||||||||| ||||||||    
T  14494511 aataaataaaggtcaaatactatgatattttgttgtagaactttttctaatgaaataaattgctaaagatagatgtttatatatgtattttaattttcat 14494610  T
Q  508 tttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgt 596  Q
    |||||||||| | |||||||||||||    |||||||| | |||||||||||||| ||| ||||||| |||||||||||| || |||||    
T  14494611 tttagaccgtctttaaataaattaac----atatatgtagcggtgtcggtgtcctgtatattttacattagcggtgtcgacgtgtccgt 14494695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 230 - 587
Target Start/End: Complemental strand, 17540287 - 17539932
Alignment:
Q  230 tataacactcatc-gaactgtttcggacaactcagacaaatatctaaagcannnnnnn-ctctcttgcttccacatacggttagatacaagagttacata 327  Q
    ||||||||||||  |||| || |||||||||||||||||||||||||| ||        ||||||||||||| || ||  | ||||||||||||||||||    
T  17540287 tataacactcatatgaaccgtgtcggacaactcagacaaatatctaaaacaatttttttctctcttgcttccgcacaccat-agatacaagagttacata 17540189  T
Q  328 tgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatgaataaataaagataaaata 426  Q
    |||||||||||||||||||||||||||| | ||  |  ||| | ||||||||| |||||||||||| ||| || |||||| ||||||||||| | |||||    
T  17540188 tgttttgagaaatgttgatcaattaggggttataaaagttatagttgattatatcatttttagcttttttgatagtagataaataaataaaggtcaaata 17540089  T
Q  427 ctacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaata 526  Q
    ||| |||||||| ||  ||| ||||||||||||  |||| |||| ||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||    
T  17540088 ctatgatatcttattgcagaactttttctaatgtcataaattgcccaagttagatgtttatatatgtattttaattttcattttagaccgtctttaaata 17539989  T
Q  527 aattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcga 587  Q
    |||||||||    ||||||   |||||||||||| ||||||||||||| || |||||||||    
T  17539988 aattaacat----atatgtaatggtgtcggtgtcttatattttttacattaacggtgtcga 17539932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 372 - 641
Target Start/End: Complemental strand, 19294510 - 19294244
Alignment:
Q  372 ttgattataacattttt-agcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttg 469  Q
    ||||||||| ||||||| ||||| ||| || |||||||||||||||||| | |||||||| |||||||||||   || |||||||||||||||||| |||    
T  19294510 ttgattatatcattttttagcttttttcatagtagatgaataaataaaggtcaaatactatgatatcttgtt---gaactttttctaatgaaataaattg 19294414  T
Q  470 ctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatatttt 569  Q
    || |||||||||||||| ||||||||||| |||| ||||||||||||| | |||||||||||||    |||||||| | ||| |||||||||||||||||    
T  19294413 cttaagttagatgtttatatatgtattttaatttccattttagaccgtctttaaataaattaac----atatatgtagcggtatcggtgtcctatatttt 19294318  T
Q  570 ttacaatagcggtgtcgaagtatccgtatcagtgtcgt--atcaggtgtccgtgtcggagtccatacttgatag 641  Q
    ||||| |||||||||||| || | ||| ||||||||||   |||||||||| |||| |||||||| ||| ||||    
T  19294317 ttacattagcggtgtcgatgtgttcgtgtcagtgtcgtgcgtcaggtgtccatgtcagagtccatgcttcatag 19294244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 287 - 617
Target Start/End: Complemental strand, 57208 - 56893
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattag-ggttaattgacattacaattgattataacatt 385  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| ||| || | || ||||||| | ||||||||||||||    
T  57208 ctctcttgcttccacataccgt-agatacaagagttacatatgtttggagaaatgttgatcaactagagggttatagacattaaagttgattataacatt 57110  T
Q  386 tttagcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtt 484  Q
    |||| ||| ||| || ||||||||||||            |||||  ||||||| | ||||| | |||||||||||||||| |||||||||||||||| |    
T  57109 tttaccttttttgatagtagatgaataa------------tactattatatcttatattagaacattttctaatgaaataagttgctcaagttagatgct 57022  T
Q  485 tagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgt 584  Q
    ||   || |||||| ||||||  |||||||||| |||| ||||||||||    |||||||| | |||||  ||||||||||||||||| | |||||||||    
T  57021 tatgaatatattttaattttcgatttagaccgtctatagataaattaac----atatatgtagcggtgttcgtgtcctatattttttatattagcggtgt 56926  T
Q  585 cgaagtatccgtatcagtgtcgtatcaggtgtc 617  Q
    ||| || ||||||||| |||||| |||||||||    
T  56925 cgatgtgtccgtatcaatgtcgtgtcaggtgtc 56893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 395 - 624
Target Start/End: Complemental strand, 34709031 - 34708806
Alignment:
Q  395 tttatggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgta 494  Q
    ||||| |||||||||||||||||| | |||||||| |||||||||||  ||| |||||||||||||||||| || ||||||||||||||||| |||||||    
T  34709031 tttatagtagatgaataaataaaggtcaaatactatgatatcttgttggagaactttttctaatgaaataaatttctcaagttagatgtttatatatgta 34708932  T
Q  495 ttttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatcc 594  Q
    |||| ||||| |||||||||  | | |||||||||||||    ||||| || || ||||||||||||||||||| ||||| || |||| ||||  |||||    
T  34708931 ttttaattttaattttagactatctttaaataaattaac----atatacgtagatgtgtcggtgtcctatatttcttacattaacggtatcgacttatcc 34708836  T
Q  595 gtatcagtgtcgtatcaggtgtccgtgtcg 624  Q
    || | ||| |||||| || | |||||||||    
T  34708835 gtgttagtatcgtattagatatccgtgtcg 34708806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 287 - 535
Target Start/End: Complemental strand, 19542350 - 19542100
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacattt 386  Q
    ||||||||||||||||||    || ||||||||||||||| ||||||||||||| |||| |||||| || | |  || |||| | |||||||||||| ||    
T  19542350 ctctcttgcttccacataaccgtacatacaagagttacatttgttttgagaaatattgaacaattaagggttagagatattaaagttgattataacaatt 19542251  T
Q  387 ttagc-ttctttatggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatg-tt 484  Q
    ||||| ||||| || ||||||||||||||||||   |||||||| ||||| ||||||||||  |||||| |||||||| | ||  ||||||||||||  |    
T  19542250 ttagcattcttgatagtagatgaataaataaaggacaaatactaagatattttgttttagaattttttccaatgaaatcaatttttcaagttagatgcct 19542151  T
Q  485 tagatatgtattttcattttcattttagaccgtatataaataaattaacat 535  Q
    ||  |||||||||| ||||| |||||| ||||| |||||||||||||||||    
T  19542150 tatgtatgtattttgattttaattttataccgtctataaataaattaacat 19542100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 422 - 632
Target Start/End: Original strand, 34011237 - 34011443
Alignment:
Q  422 aaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatat 521  Q
    |||||||| ||||||||||| |||| |||||| | |||| |||| |||||| ||||||||||||| ||||||||||| ||||||| ||||||| || | |    
T  34011237 aaatactatgatatcttgttgtagaactttttatgatgacataaattgctcgagttagatgtttatatatgtattttaattttcactttagacggtcttt 34011336  T
Q  522 aaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtg 621  Q
    ||||||||||||    ||||| ||   |||||||||||||||||||||||||| |||||| ||||| || ||||| ||||||| || ||| |||||||||    
T  34011337 aaataaattaac----atataagtaacggtgtcggtgtcctatattttttacattagcggcgtcgacgtgtccgtgtcagtgttgtgtcacgtgtccgtg 34011432  T
Q  622 tcggagtccat 632  Q
    ||  |||||||    
T  34011433 tcaaagtccat 34011443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 422 - 601
Target Start/End: Complemental strand, 34013613 - 34013438
Alignment:
Q  422 aaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatat 521  Q
    |||||||| ||||||||||| |||| |||||| | |||| |||| |||||| ||||||||||||| ||||||||||| ||||||| ||||||| || | |    
T  34013613 aaatactatgatatcttgttgtagaactttttatgatgacataaattgctcgagttagatgtttatatatgtattttaattttcactttagacggtcttt 34013514  T
Q  522 aaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcag 601  Q
    ||||||||||||    ||||| ||   |||||||||||||||||||||||||| |||||||||||| || ||||| ||||    
T  34013513 aaataaattaac----atataagtaacggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtcag 34013438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 34010949 - 34011014
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacac 83  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||  |||||||    
T  34010949 gacacctcaaggactaggcgtgtcgcggtgtccgacacgcgtcggtgtccgacactccaatgacac 34011014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 17540442 - 17540368
Alignment:
Q  10 gaagcagagacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacacc 84  Q
    |||||| | |||||||||||| ||| |||||||| |||||||| |||| |||||||||||||||| |||||||||    
T  17540442 gaagcacatacacctctaggattagacgtgtcgcagtgtccgatacgcatcggtgtccgacactcctatgacacc 17540368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 488 - 566
Target Start/End: Original strand, 12790569 - 12790643
Alignment:
Q  488 atatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatat 566  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||||    |||||||| | ||||||||||||||||||    
T  12790569 atatgtaatttgattttcattttagatcgtatataaataaattaac----atatatgtagcggtgtcggtgtcctatat 12790643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 34013901 - 34013836
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacac 83  Q
    |||||||| |||||||| ||||||||||||||||||| || ||||||||||||||||  |||||||    
T  34013901 gacacctcaaggactaggcgtgtcgcggtgtccgacaagcgtcggtgtccgacactccaatgacac 34013836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 14494180 - 14494246
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacacc 84  Q
    ||||||||||||||||| |||||| |||| |||||||||| |||  ||||||||||| |||||||||    
T  14494180 gacacctctaggactagacgtgtcacggtatccgacacgcgtcgaggtccgacactcctatgacacc 14494246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 617
Target Start/End: Complemental strand, 2602255 - 2601975
Alignment:
Q  333 tgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatgaataaataaagataaaatactacg 431  Q
    ||||||||||||||||| ||||||| ||  |||||| | ||||||| ||||  ||||  || ||  || ||| ||| ||||||||||   ||||||||      
T  2602255 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggtaaatactatt 2602156  T
Q  432 atatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaatta 531  Q
     ||||||||| || | |||||||||||||| |||  |||| ||||||||||  ||  | |||||||| ||| | | |||||| | | |||||||||||||    
T  2602155 gtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgattcttaatttagatcttttataaataaatta 2602057  T
Q  532 acatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtc 617  Q
    |    |||||| || ||||||||||||||| |  ||||||||| || | ||||||| || ||||| | | |||||| |||||||||    
T  2602056 a----tatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgacgtgtccgtgtaactgtcgtgtcaggtgtc 2601975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 387
Target Start/End: Complemental strand, 34709142 - 34709064
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttt 387  Q
    |||||| |||||||| |||| |||||| ||||||||||||||||||| | ||  |||||| | ||||||||| ||||||    
T  34709142 tagatataagagttatatatattttgaaaaatgttgatcaattaggggttatatacattatagttgattatatcatttt 34709064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 34011176 - 34011219
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaatta 352  Q
    |||||||||||||| || ||||||||||||||| ||||||||||    
T  34011176 tagatacaagagttgcacatgttttgagaaatggtgatcaatta 34011219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 34013674 - 34013631
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaatta 352  Q
    |||||||||||||| || ||||||||||||||| ||||||||||    
T  34013674 tagatacaagagttgcacatgttttgagaaatggtgatcaatta 34013631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 19294732 - 19294695
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacac 55  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  19294732 gacacctctaggattaggcgtgtcgcggtgtccgacac 19294695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 6e-73; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 309 - 641
Target Start/End: Complemental strand, 26576251 - 26575930
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatg 407  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| | | || ||||||| | ||||||||| | |||||||||| ||| || |||||||    
T  26576251 tagatacaagagttacatatgttttgagaaatgttgatcgattagtggttatagacattatagttgattatatcgtttttagcttatttgatagtagatg 26576152  T
Q  408 aataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcat 507  Q
    ||||||||||| | |||||||| ||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||    
T  26576151 aataaataaaggtcaaatactatgatatcttgttgtagaactttttctaatgacataaattgctcaagttagatgtttatatatgtattttaattttcat 26576052  T
Q  508 tttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgt 607  Q
    |||||| ||| | |||||||||||| || |||          ||  ||||||||||||||||||||| |||||||||||| || ||||  | ||||| ||    
T  26576051 tttagatcgtctttaaataaattaaaatatat----------gtaacggtgtcctatattttttacattagcggtgtcgacgtgtccg--tgagtgttgt 26575964  T
Q  608 atcaggtgtccgtgtcggagtccatacttgatag 641  Q
     |||||||||||||||||||||||| ||| ||||    
T  26575963 gtcaggtgtccgtgtcggagtccatgcttcatag 26575930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 384 - 641
Target Start/End: Original strand, 32200870 - 32201124
Alignment:
Q  384 tttttagcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatg 482  Q
    |||||||||| ||| || |||||||||||||||||| | |||||||| ||||||||||| |||| ||||||||||||| |||| ||||||||||||||||    
T  32200870 tttttagcttttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaactttttctaatgacataaattgctcaagttagatg 32200969  T
Q  483 tttagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggt 582  Q
    |||| ||||||||||| |||||||||||||||||| | |||||||||||||    |||||| |   |||||||||||||||||||||||||| |||||||    
T  32200970 tttatatatgtattttaattttcattttagaccgtctttaaataaattaac----atatatttaatggtgtcggtgtcctatattttttacattagcggt 32201065  T
Q  583 gtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtccatacttgatag 641  Q
    ||||| || ||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||    
T  32201066 gtcgacgtgtccgtgtcagtgtcgtgtcaggtgttcgtgttggagtccatgcttcatag 32201124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 362 - 641
Target Start/End: Complemental strand, 9929768 - 9929492
Alignment:
Q  362 gacattacaattgattataacatttttagcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatga 460  Q
    ||||||||| ||||| ||| |||||| ||| | ||| || |||||||||||||||||| | |||||||| ||||||||||| |||| |||||||||||||    
T  9929768 gacattacagttgatcatatcattttgagcatttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaactttttctaatga 9929669  T
Q  461 aataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtc 560  Q
    ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||    |||||||| |  |||| ||||||    
T  9929668 aataaattgctcaaattagatgtttatatatgtattttaattttcattttagaccgtctttaaataaattaac----atatatgtagcagtgttggtgtc 9929573  T
Q  561 ctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtccatacttgatag 641  Q
    |||||||||||||| |||||||||||| || ||||| |||||||||| ||| ||||  |||||| ||||||| ||| ||||    
T  9929572 ctatattttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaagtgtttgtgtcgtagtccatgcttcatag 9929492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 309 - 628
Target Start/End: Complemental strand, 27004228 - 27003909
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttctttatg----gtag 404  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||||| | ||  |||||| | ||||||||| ||||||||| || ||| |     ||||    
T  27004228 tagatacaagagttgtatatgttttgaaaaatgttgatcaattaggggttatgtacattatagttgattatatcatttttagtttttttttttacagtag 27004129  T
Q  405 atgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcatttt 504  Q
    |||||||||||||| | |||||||| |||||||||||  ||| |||||| ||||||||||| || ||||||||||||||||| |||||||||||  ||||    
T  27004128 atgaataaataaaggtcaaatactatgatatcttgttggagaactttttttaatgaaataaatttctcaagttagatgtttatatatgtattttagtttt 27004029  T
Q  505 cattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgt 604  Q
    ||||||||||||| | |||||||||||||||    ||| || | |||||||||||||||||||||||||| || | ||||| |  ||||||| | ||| |    
T  27004028 cattttagaccgtctttaaataaattaacat----atacgtagcggtgtcggtgtcctatattttttacattaacagtgtcaacttatccgtgttagtat 27003933  T
Q  605 cgtatcaggtgtccgtgtcggagt 628  Q
    ||||| || | |||||||||||||    
T  27003932 cgtattagatatccgtgtcggagt 27003909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 309 - 601
Target Start/End: Original strand, 34409553 - 34409844
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttct--ttatggtagat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| | ||||||||| |||||||||||| |  | | |||||||    
T  34409553 tagatacaagagttacatatgttttgagaaatgttgatcaattaggggttatagacattatagttgattatatcatttttagctttttctgacggtagat 34409652  T
Q  407 gaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttca-ttttc 505  Q
     ||||||||||| | ||||||||  |||||||||| |||| |||||||||||| | ||| |||||||||||||||||||| ||||||||||| | ||||     
T  34409653 aaataaataaaggtcaaatactataatatcttgttgtagaactttttctaatg-actaaattgctcaagttagatgtttatatatgtattttaatttttt 34409751  T
Q  506 attttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctata-ttttttacaatagcggtgtcgaagtatccgtatcag 601  Q
    ||||| |||||| ||||||||||||||    ||||||| |   ||||||||||||||| | ||||||||| |||||||||||| || ||||| ||||    
T  34409752 attttggaccgtctataaataaattaa----tatatatctaatggtgtcggtgtcctagatttttttacattagcggtgtcgatgtgtccgtgtcag 34409844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 401 - 617
Target Start/End: Complemental strand, 13037405 - 13037193
Alignment:
Q  401 gtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttca 500  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||| ||||||| ||||| |||| |||||||||||||||||||  ||||| ||||| |    
T  13037405 gtagatgaataaataaagatcaaatactatgatatcttgttgtagaactttttcaaatgacataaattgctcaagttagatgtttgtatatgcattttaa 13037306  T
Q  501 ttttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatca 600  Q
    |||||||||||| | || | |||||||||||||    ||||||||   | ||||||| || ||||||||||||| | ||| |||| | |||| ||| |||    
T  13037305 ttttcattttagcctgtctttaaataaattaac----atatatgtaacgatgtcggtatcttatattttttacattggcgatgtcaacgtattcgtgtca 13037210  T
Q  601 gtgtcgtatcaggtgtc 617  Q
     |||||| |||| ||||    
T  13037209 atgtcgtgtcagatgtc 13037193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 17651670 - 17651605
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacac 83  Q
    ||||||| ||||| ||| |||||||||||||||||||||| || ||||||||||||||||||||||    
T  17651670 gacacctttaggattaggcgtgtcgcggtgtccgacacgcgtcagtgtccgacactcttatgacac 17651605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 437 - 587
Target Start/End: Complemental strand, 41849080 - 41848934
Alignment:
Q  437 ttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaacatg 536  Q
    ||||| |||| |||||| |||||||||||  ||||||||||||||   ||  |||||||||| ||| ||| ||||||   | |||||||||||||| ||     
T  41849080 ttgttatagacctttttttaatgaaataaagtgctcaagttagattcatatgtatgtattttgattctcaatttagatattttataaataaattaatata 41848981  T
Q  537 tatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcga 587  Q
    || |||    | |||||||||||||||||||||||||| ||||||||||||    
T  41848980 tagata----gcggtgtcggtgtcctatattttttacattagcggtgtcga 41848934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 316 - 474
Target Start/End: Original strand, 44649945 - 44650106
Alignment:
Q  316 aagagttacatatgttttgagaaatgttgatcaatta-gggttaattgacattacaattgattataacatttttagcttcttt-atggtagatgaataaa 413  Q
    |||||||| |||||| |||| |||||||||||||||| ||| | || || |||| | ||||||| |||||||||| ||| ||| || |||||||||||||    
T  44649945 aagagttatatatgtgttgaaaaatgttgatcaattaggggcttatagaaattaaagttgattacaacatttttaacttttttgatagtagatgaataaa 44650044  T
Q  414 taaagataaaatactacgatatcttgttttagagctttttct-aatgaaataacttgctcaa 474  Q
    ||||| | |||| ||| | |||||||||||| |  ||||| | |||||||||| ||||||||    
T  44650045 taaaggtcaaattctatggtatcttgttttataattttttttcaatgaaataaattgctcaa 44650106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 403 - 511
Target Start/End: Original strand, 4748147 - 4748255
Alignment:
Q  403 agatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcatt 502  Q
    |||||||||||||||| | ||||||||   || ||||||||||| ||||||| |||||||||| |||||||||||||| ||  |  ||| |||||| |||    
T  4748147 agatgaataaataaaggtcaaatactatcgtaacttgttttagaactttttccaatgaaataaattgctcaagttagaagtacatgtatctattttgatt 4748246  T
Q  503 ttcatttta 511  Q
    |||||||||    
T  4748247 ttcatttta 4748255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 41849408 - 41849343
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacac 83  Q
    ||||||||||| | ||| |||||||||||||| ||||||| |||||||||||||||| ||||||||    
T  41849408 gacacctctagaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgacactcctatgacac 41849343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 9929839 - 9929799
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaa 349  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9929839 tagatacaagagttacatatgttttgagaaatgttgatcaa 9929799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 13039069 - 13039025
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattag 353  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  13039069 tagatacaagagttacatatgttatgagaaatgttgatcaattag 13039025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 32200816 - 32200857
Alignment:
Q  311 gatacaagagttacatatgttttgagaaatgttgatcaatta 352  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  32200816 gatacaagagttacatatgttttgagaaatgctgatcaatta 32200857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 532
Target Start/End: Complemental strand, 17651321 - 17651225
Alignment:
Q  436 cttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaa 532  Q
    |||||| |||| ||| || ||||||||||| ||||||||||||||||  ||  ||||||||||  |||| | |||||| | ||||||||||||||||    
T  17651321 cttgttatagaacttcttgtaatgaaataaattgctcaagttagatgcatatgtatgtattttggtttttaatttagatcttatataaataaattaa 17651225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 34409326 - 34409386
Alignment:
Q  20 cacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatga 80  Q
    ||||||||||||||| |||||||||||||| ||||||| | | |||||||||||| |||||    
T  34409326 cacctctaggactaggcgtgtcgcggtgtcggacacgcgttgatgtccgacactcctatga 34409386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 550 - 596
Target Start/End: Original strand, 4748269 - 4748315
Alignment:
Q  550 gtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgt 596  Q
    ||||||||||||||||||||||||| |||||||||||| || |||||    
T  4748269 gtgtcggtgtcctatattttttacattagcggtgtcgatgtgtccgt 4748315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 32200622 - 32200660
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacg 56  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  32200622 gacacctctaggactaggcgtgtcgcggtgtccgacacg 32200660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 481
Target Start/End: Original strand, 16661253 - 16661322
Alignment:
Q  412 aataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagat 481  Q
    ||||||| | ||||||||   |||||||||||||| |||||| |||| |||||| |||||||||||||||    
T  16661253 aataaaggttaaatactatcctatcttgttttagaactttttttaataaaataaattgctcaagttagat 16661322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 26576466 - 26576429
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacac 55  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  26576466 gacacctctaggactagacgtgtcgcggtgtccgacac 26576429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 535
Target Start/End: Complemental strand, 40279877 - 40279811
Alignment:
Q  467 ttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaacat 535  Q
    |||||||||||||||| |||  ||||| |||| |||||||||||||||||  | |||||||||||||||    
T  40279877 ttgctcaagttagatgcttatgtatgtcttttgattttcattttagaccg--tctaaataaattaacat 40279811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 15990040 - 15990082
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaatt 351  Q
    |||||| ||||||||||||||| |||||||||||||| |||||    
T  15990040 tagatataagagttacatatgtgttgagaaatgttgaccaatt 15990082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 4747829 - 4747865
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgaca 54  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  4747829 gacacctctaggactaggcgtgtcgtggtgtccgaca 4747865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 3e-71; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 287 - 641
Target Start/End: Original strand, 32676586 - 32676929
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattagggtta-attgacattacaattgattataacatt 385  Q
    |||||||||||||||| |  || | ||||||||||||||||||||||||||||||||| ||||||||||  | || ||||||| | ||||||||||||||    
T  32676586 ctctcttgcttccacacattgtaa-atacaagagttacatatgttttgagaaatgttgttcaattagggggatatagacattaaagttgattataacatt 32676684  T
Q  386 tttagcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtt 484  Q
    |||| ||| ||| || |||||||||||||||| ||| ||||| || |||||||||||||| | |||||||||||||||||| |||||||| ||||||| |    
T  32676685 tttaacttttttgatagtagatgaataaataa-gatcaaataatatgatatcttgttttataactttttctaatgaaataaattgctcaa-ttagatgct 32676782  T
Q  485 tagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgt 584  Q
    ||  |||||||||| |||||||||||||||||| || ||||||||||||||    |||||| |  | ||||||||||||| ||||||||| |||||||||    
T  32676783 tatgtatgtattttgattttcattttagaccgtctaaaaataaattaacat----atatgtagcagggtcggtgtcctattttttttacattagcggtgt 32676878  T
Q  585 cgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtccatacttgatag 641  Q
    |||      ||| |||||||||| |||||||||||||||||||||||| ||| ||||    
T  32676879 cga------cgtgtcagtgtcgtgtcaggtgtccgtgtcggagtccatgcttcatag 32676929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 422 - 642
Target Start/End: Complemental strand, 40837882 - 40837666
Alignment:
Q  422 aaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatat 521  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  40837882 aaatactacaatatcttgttttagaactttttctaatgaaataatttgctcaagttagatgcttatatatgtattttgattttcattttagaccgtatat 40837783  T
Q  522 aaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtg 621  Q
    |||||||||||||| ||| ||    | |||||| ||||| ||||||||||||| ||||||| || |||| ||||| ||| | |||| |||||||||||||    
T  40837782 aaataaattaacatatatcta----gcggtgtcagtgtcttatattttttacactagcggtatcaaagtgtccgtgtcattatcgtgtcaggtgtccgtg 40837687  T
Q  622 tcggagtccatacttgatagg 642  Q
    ||||||||||||||| |||||    
T  40837686 tcggagtccatacttcatagg 40837666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 201 - 418
Target Start/End: Complemental strand, 40838202 - 40837983
Alignment:
Q  201 cgacactcctaggaccggtgtccgacacctata--acactcatcgaact-gtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgctt 297  Q
    |||||||| | |||||||||||||||| |||||  ||||||||  || | || ||||||||||||||||||| |||||| ||         |||||||||    
T  40838202 cgacactctttggaccggtgtccgacatctatataacactcatacaagtcgtgtcggacaactcagacaaatgtctaaaacattttttttcctcttgctt 40838103  T
Q  298 ccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt 397  Q
    ||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||| | || ||||||||||||||||||| ||     
T  40838102 ccagataccgt-agatacaagagttacatatgttttgagaaatgttgatcaattaggggtaataaacattatagtttattataacatttttagctttttg 40838004  T
Q  398 atggtagatgaataaataaag 418  Q
    || ||||||||||||||||||    
T  40838003 atagtagatgaataaataaag 40837983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 322 - 504
Target Start/End: Original strand, 38989237 - 38989418
Alignment:
Q  322 tacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatgaataaataaagat 420  Q
    ||||||||||| || ||||||||||||||||||| | || |||||||   ||||||||| ||||||||  |  ||| || |||||||||||||||||  |    
T  38989237 tacatatgtttcgataaatgttgatcaattaggggttatagacattat--ttgattatatcatttttaaatcttttgatagtagatgaataaataaaagt 38989334  T
Q  421 aaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcatttt 504  Q
     |||||||| ||||||||||| |||| ||||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||    
T  38989335 caaatactatgatatcttgttgtagaactttttctaatgacataaattgctcaagttagatgttgatatatgtattttaatttt 38989418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 585
Target Start/End: Original strand, 41815795 - 41815856
Alignment:
Q  519 tataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtc 585  Q
    ||||||||||||||    ||||||||| | |||||||||||||||| ||||||||| ||||||||||    
T  41815795 tataaataaattaa----tatatatgtagcggtgtcggtgtcctat-ttttttacattagcggtgtc 41815856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 598 - 642
Target Start/End: Original strand, 39732278 - 39732322
Alignment:
Q  598 tcagtgtcgtatcaggtgtccgtgtcggagtccatacttgatagg 642  Q
    |||||||||| |||||||| ||||||||||||||| ||| |||||    
T  39732278 tcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatagg 39732322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 204 - 632
Target Start/End: Complemental strand, 23432168 - 23431736
Alignment:
Q  204 cactcctaggaccggtgtccgacacctata--acactcat-cgaactgtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgcttcca 300  Q
    ||||||||||||||||||||||||| ||||  |||||||| ||| | || |||||||||||||| ||||||||| | ||       ||||| |  |||||    
T  23432168 cactcctaggaccggtgtccgacacttatataacactcatacgagccgtgtcggacaactcagataaatatctagaacatttttt-ctctcat--ttcca 23432072  T
Q  301 catacggttagatacaagagttacatatgttttgagaaatgttgatcaattagggtt--------aattgacattacaattgattataacatttttagct 392  Q
    ||||| |  ||||||||||||||||||||||||||||| ||| || |||||||||          ||| ||||||||  | |||||||||||||||| ||    
T  23432071 catacaga-agatacaagagttacatatgttttgagaagtgt-gaacaattagggggtaatagacaatagacattaccgtagattataacatttttaact 23431974  T
Q  393 tcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatat 491  Q
    | ||| || |||||||||||||| ||  | |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  23431973 tttttgatagtagatgaataaatgaatgtcaaatactacgatattttgttttagaactttttctaatgaaataacttgctcaagttagatgcttatatat 23431874  T
Q  492 gtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctata-ttttttacaatagcggtgtcgaagt 590  Q
    ||||||| ||||||||||||||||||||||||||||||||||    |||||||| |   ||||||| ||||||| ||||||||| || | |||| |||||    
T  23431873 gtattttgattttcattttagaccgtatataaataaattaac----atatatgtagcactgtcggtatcctatatttttttacactaccagtgttgaagt 23431778  T
Q  591 atccgtatcagtgtcgtatcaggtgtccgtgtcggagtccat 632  Q
     |  || |||||||||||||||||||||||||||||||||||    
T  23431777 gtttgtgtcagtgtcgtatcaggtgtccgtgtcggagtccat 23431736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 287 - 629
Target Start/End: Complemental strand, 32741058 - 32740723
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacattt 386  Q
    |||||||||||||||| ||  | ||||||||||||||||||||||||| |||||||||||||||| ||| | || ||||||||||||||||||  |||||    
T  32741058 ctctcttgcttccacacaccat-agatacaagagttacatatgttttgtgaaatgttgatcaattgggggttatagacattacaattgattat--cattt 32740962  T
Q  387 ttagcttcttt-atggtagatgaataaataaagataaaatactac--gatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgt 483  Q
    ||||||| ||| ||||||||||||||||||||| | ||||||||   |||||||||||   || ||||||||||| |||||| |||||||||||||||||    
T  32740961 ttagcttttttgatggtagatgaataaataaaggtcaaatactatatgatatcttgtt---gaactttttctaattaaataaattgctcaagttagatgt 32740865  T
Q  484 ttagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtg 583  Q
    ||| ||||||||||| |||||||||||||||| | | || ||||||||||    |||||||| | |||||| ||||||||||||||||||| ||   |||    
T  32740864 ttatatatgtattttaattttcattttagaccatctttagataaattaac----atatatgtagtggtgtcagtgtcctatattttttacattaatagtg 32740769  T
Q  584 tcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtc 629  Q
    ||||  |  |||| |||||||||| |||| ||| ||||||| ||||    
T  32740768 tcgatatgaccgtgtcagtgtcgtgtcagatgttcgtgtcgaagtc 32740723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 309 - 642
Target Start/End: Original strand, 9148971 - 9149298
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatg 407  Q
    |||||||||||||||| |||| ||  |||||||| |||||||| | | | || ||||||| | |||  ||||||||||||||||| ||| || ||||||     
T  9148971 tagatacaagagttacgtatgatta-agaaatgtagatcaattggtggttatagacattaaagttggctataacatttttagcttttttgatagtagata 9149069  T
Q  408 aataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcat 507  Q
    ||||||||||| |||||||||| |||||||||||||| |  ||||||||||||||||| || ||||||||||||  ||| ||||||||||| ||||||||    
T  9149070 aataaataaaggtaaaatactatgatatcttgttttaaacttttttctaatgaaataaatttctcaagttagattcttatatatgtattttgattttcat 9149169  T
Q  508 tttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgt 607  Q
     ||| | ||| |||||||||||||||      ||| || |  |||||  | ||||||||||||||||  ||||||||||| || ||||| || |||||||    
T  9149170 attatatcgtttataaataaattaac------ataagtagcagtgtcattttcctatattttttacataagcggtgtcgatgtgtccgtgtccgtgtcgt 9149263  T
Q  608 atcaggtgtccgtgtcggagtccatacttgatagg 642  Q
    ||  |||| ||||||  |||||||| |||||||||    
T  9149264 atttggtgaccgtgttagagtccatgcttgatagg 9149298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 18476634 - 18476506
Alignment:
Q  372 ttgattataacatttttagcttcttt-atggtagatgaataaataaa-gataaaatactacgatatcttgttttagagctttttctaatgaaataacttg 469  Q
    ||||||| || ||||||||||| ||| || ||||||||||||||||| | | |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  18476634 ttgattacaatatttttagcttttttgatagtagatgaataaataaaaggtcaaatactacgatatcttgctttagaactttttctaatgaaataacttg 18476535  T
Q  470 ctcaagttagatgtttagatatgtatttt 498  Q
    ||||||||||||| ||| |||||||||||    
T  18476534 ctcaagttagatgcttatatatgtatttt 18476506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 309 - 513
Target Start/End: Original strand, 48632554 - 48632760
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaatta-gggttaattgacattacaattgattataacatttttagcttcttt-atggtagat 406  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||| | || || |||| | ||||||| ||| |||||||||| ||| || |||||     
T  48632554 tagatacaagagttgcatatgtgttgagaaatgttgatcaattacggggttatagaaattaaagttgattacaacgtttttagcttttttgatagtagaa 48632653  T
Q  407 gaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttca 506  Q
    |||||||||||| | |||||||| | |||||||||||||| ||||||  ||||||||||  ||||||||||| ||  |||  |||| ||||| ||||||     
T  48632654 gaataaataaaggtcaaatactatggtatcttgttttagaacttttttcaatgaaataaactgctcaagttaaattcttatgtatgaattttgattttcg 48632753  T
Q  507 ttttaga 513  Q
    |||||||    
T  48632754 ttttaga 48632760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 309 - 579
Target Start/End: Original strand, 7021540 - 7021811
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattag-ggttaattgacattacaa--ttgattataacatttttagcttcttt--atggta 403  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||| || | || || |||| ||  ||||||| ||||||||| |||| |||  || |||    
T  7021540 tagatataagagttacatatgtgttgagaaatgttgataaattagcgggttatagaaattataaagttgattacaacatttttggctttttttgatagta 7021639  T
Q  404 gatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattt 503  Q
    ||| ||||||||||| | ||||  |  | ||| |||||||||| ||||||  ||| |||||| |||| |||||||||||||||  ||| |||||| ||||    
T  7021640 gataaataaataaaggtcaaatcttgtggtattttgttttagaacttttttcaataaaataaattgcgcaagttagatgtttatgtatatattttgattt 7021739  T
Q  504 tcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagc 579  Q
    |||||||| ||||| ||||||||||||||    ||||||||  | ||| | ||| |||||||||||||||| ||||    
T  7021740 tcattttaaaccgtttataaataaattaa----tatatatgaagcggtattggtatcctatattttttacattagc 7021811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 317 - 427
Target Start/End: Complemental strand, 126435 - 126323
Alignment:
Q  317 agagttacatatgttttgagaaatgttgatcaatta--gggttaattgacattacaattgattataacatttttagcttctttatggtagatgaataaat 414  Q
    ||||||||||||||||||||||||||||||||||||  ||| | || ||||||| | |||||||||||||||||| ||| || || ||||||||||||||    
T  126435 agagttacatatgttttgagaaatgttgatcaattaggggggttatagacattaaagttgattataacatttttaactttttaatagtagatgaataaat 126336  T
Q  415 aaagataaaatac 427  Q
    |||| | ||||||    
T  126335 aaaggtcaaatac 126323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 333 - 532
Target Start/End: Complemental strand, 3387821 - 3387621
Alignment:
Q  333 tgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatgaataaataaagataaaatactacg 431  Q
    |||||||||||||||||| | || | || ||||||| | ||||||| ||| ||||||  || ||  ||||||||||||||||||||| | ||||||||      
T  3387821 tgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaatttttcgatggtagatgaataaataaaggtcaaatactatt 3387722  T
Q  432 atatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaatta 531  Q
     ||||||||| |||| |||||| |||| |||||| ||| |||||||| |||  ||  |||||||||| ||| ||| ||||||   | |||||||||||||    
T  3387721 ttatcttgttatagaactttttttaataaaataaattgttcaagttaaatgcatatgtatgtattttgattctcaatttagatattttataaataaatta 3387622  T
Q  532 a 532  Q
    |    
T  3387621 a 3387621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 538 - 641
Target Start/End: Original strand, 10171647 - 10171744
Alignment:
Q  538 atatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtccatacttg 637  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||||||      || |||||||||| || ||||||||||| ||||||||| |||     
T  10171647 atatatgtagcggtgtcggtgtcctatattttttacactagcggtgtcgaa------gtttcagtgtcgtgtccggtgtccgtgttggagtccatgcttc 10171740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 332 - 482
Target Start/End: Complemental strand, 3955117 - 3954966
Alignment:
Q  332 ttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatgaataaataaagataaaatactac 430  Q
    ||||||||||||||||||  |||| | |  || |||| | ||||||| ||| |||||||||| ||  || ||||||| |||||||||| | |||||| |     
T  3955117 ttgagaaatgttgatcaacaaggggttacagagattaaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgat 3955018  T
Q  431 gatatcttgttttagagctttttctaatgaaataacttgctcaagttagatg 482  Q
      |||||| ||||||| |||||| ||||||||||| ||||||||||||||||    
T  3955017 cgtatcttattttagaactttttttaatgaaataaattgctcaagttagatg 3954966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 512
Target Start/End: Complemental strand, 125253 - 125163
Alignment:
Q  422 aaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttag 512  Q
    |||||||| ||| |||||||||| | |||||| ||||||||||| |||||||||||||||  ||   |||||||||| |||| ||||||||    
T  125253 aaatactatgatttcttgttttaaaactttttttaatgaaataaattgctcaagttagatacttgtgtatgtattttgatttacattttag 125163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 623
Target Start/End: Complemental strand, 16426493 - 16426311
Alignment:
Q  437 ttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaacatg 536  Q
    ||||| |||| ||| || ||||||| ||| ||||||||||||||||  ||  |||||||||| ||| | | |||| | | | ||||||||||||||        
T  16426493 ttgttatagaacttgttttaatgaagtaaattgctcaagttagatgcatatgtatgtattttgattcttaatttatatcttttataaataaattaa---- 16426398  T
Q  537 tatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtc 623  Q
    |||||| || | |||||| |||||||||  |||||||| || |||||| || || ||||| ||||||| || |||| ||||||||||    
T  16426397 tatataggtagcggtgtcagtgtcctatgctttttacattaacggtgttgacgtgtccgtgtcagtgttgtgtcagatgtccgtgtc 16426311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 18488420 - 18488357
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaatt 351  Q
    ||||||||||||||||||  || |||| |||||||||||| ||||||||||||||||||| ||||    
T  18488420 ctctcttgcttccacatatcgt-agatccaagagttacatgtgttttgagaaatgttgattaatt 18488357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 23432281 - 23432247
Alignment:
Q  21 acctctaggactagccgtgtcgcggtgtccgacac 55  Q
    |||||||||||||||||||||||||||||||||||    
T  23432281 acctctaggactagccgtgtcgcggtgtccgacac 23432247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 48632335 - 48632372
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacac 55  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  48632335 gacacctctaggactaggcgtgtcgcggtgtccgacac 48632372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 622
Target Start/End: Original strand, 30883216 - 30883309
Alignment:
Q  523 aataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgt 622  Q
    |||||||||| |  ||||||||  | |||||||||||||||| ||||||||| ||||||||| ||      ||| |||||||||| ||||||||||||||    
T  30883216 aataaattaataaatatatatgcagcggtgtcggtgtcctatgttttttacattagcggtgttga------cgtgtcagtgtcgtgtcaggtgtccgtgt 30883309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 48632448 - 48632486
Alignment:
Q  201 cgacactcctaggaccggtgtccgacacctataacactca 240  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  48632448 cgacactcctag-accggtgtccgacacctataacactca 48632486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 30882700 - 30882766
Alignment:
Q  17 agacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacac 83  Q
    ||||||||||| || ||| |||||||||||||| ||||| | |||||||| ||||||| || |||||    
T  30882700 agacacctctaagattaggcgtgtcgcggtgtcggacacacatcggtgtctgacactcgtacgacac 30882766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 5e-67; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 309 - 636
Target Start/End: Original strand, 45612411 - 45612731
Alignment:
Q  309 tagatacaagagttacatatgtttt-gagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagat 406  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||||| || ||||||| | ||||||||| |||||||||||| ||| || ||||||    
T  45612411 tagatacaagagttacatatgtttttgagaaatgttgattaataagggtttatagacattatagttgattatatcatttttagcttttttgatagtagat 45612510  T
Q  407 gaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttca 506  Q
    |||||||||||| | |||||     |||||||||| |||| | ||||||||||| |||| ||||||||||| |||||||| ||||||||||| |||||||    
T  45612511 gaataaataaaggtcaaata-----atatcttgttgtagaacattttctaatgacataaattgctcaagttggatgtttatatatgtattttaattttca 45612605  T
Q  507 ttttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcg 606  Q
    |||||||| || | ||||| |||||||    ||||||||    |||||||||| |||||||||||||| |||||||||||| || ||| |||||||||||    
T  45612606 ttttagacagtctttaaatgaattaac----atatatgtaattgtgtcggtgt-ctatattttttacattagcggtgtcgacgtgtccatatcagtgtcg 45612700  T
Q  607 tatcaggtgtccgtg-tcggagtccatactt 636  Q
    | ||||||||||||| ||||||| |||||||    
T  45612701 tgtcaggtgtccgtgttcggagtacatactt 45612731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 287 - 498
Target Start/End: Complemental strand, 17732986 - 17732773
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattagg-gttaattgacattacaattgattataacatt 385  Q
    ||||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||| ||||||| | |||| ||||||||| ||||||||||||||    
T  17732986 ctctcttgcttccacatatcgt-agatacaagagttacatgtgttttgagaaatgttgattaattaggaggtaatagacattacagttgattataacatt 17732888  T
Q  386 tttagcttcttt-atggtagatgaataaataaa-gataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgt 483  Q
    |||||||| ||| || ||||||||||||||||| | | |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||     
T  17732887 tttagcttttttgatagtagatgaataaataaaaggtcaaatactacgatatcttgctttagaactttttctaatgaaataacttgctcaagttagatgc 17732788  T
Q  484 ttagatatgtatttt 498  Q
    ||| |||||||||||    
T  17732787 ttatatatgtatttt 17732773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 201 - 514
Target Start/End: Original strand, 40289015 - 40289330
Alignment:
Q  201 cgacactcctaggaccggtgtccgacacctata--acactcat-cgaactgtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgctt 297  Q
    ||||||||||| || ||||||||||||||||||  |||||||| |||    | |||||||||||| ||||||||||||| ||       |||||||||||    
T  40289015 cgacactcctacgatcggtgtccgacacctatataacactcatacgagtcatgtcggacaactcaaacaaatatctaaaacatttttt-ctctcttgctt 40289113  T
Q  298 ccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt 397  Q
    ||||| ||  | |||||||||| ||||||||||||||||||||||| ||||||||||| |  | |||||||||||||||||    |||||||| || |||    
T  40289114 ccacacaccat-agatacaagatttacatatgttttgagaaatgttaatcaattaggggttgtagacattacaattgattaagttatttttagttttttt 40289212  T
Q  398 -atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtatt 496  Q
     || |||||||||||||||||| | |||||||| ||||||||||| |||| |||||||||||||||||| |||  ||||||| ||||||| |||||||||    
T  40289213 gatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaactttttctaatgaaataaattgtccaagttaaatgtttatatatgtatt 40289312  T
Q  497 ttcattttcattttagac 514  Q
    || |||||||||||||||    
T  40289313 ttaattttcattttagac 40289330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 402 - 641
Target Start/End: Complemental strand, 54305752 - 54305517
Alignment:
Q  402 tagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcat 501  Q
    ||||||||||||||||| | |||||||| ||||||||||  |||| ||||||||||| |||||| |||||||||||| ||||||  ||||||||||| ||    
T  54305752 tagatgaataaataaaggtcaaatactatgatatcttgtcgtagaactttttctaattaaataaattgctcaagttaaatgtttgtatatgtattttaat 54305653  T
Q  502 tttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcag 601  Q
    |||||||||| ||||| | |||||||||||||    |||||||| | ||||||||||||||||| |||||||| ||||| |||||| || ||||| ||||    
T  54305652 tttcattttaaaccgtctttaaataaattaac----atatatgtagcggtgtcggtgtcctataatttttacattagcgatgtcgacgtgtccgtgtcag 54305557  T
Q  602 tgtcgtatcaggtgtccgtgtcggagtccatacttgatag 641  Q
    ||| || |||||||||||||| ||||||||| ||| ||||    
T  54305556 tgttgtgtcaggtgtccgtgttggagtccatgcttcatag 54305517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 288 - 465
Target Start/End: Complemental strand, 31734703 - 31734528
Alignment:
Q  288 tctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttt 387  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||  | |||| ||| ||||||| | ||||||||||||||||    
T  31734703 tctcttgcttccacataccgt-agatacaagagttacatatgttttgagaaatgttgatcacatggggt-aatagacattatagttgattataacatttt 31734606  T
Q  388 tagcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataa 465  Q
    |||||  ||| || ||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  31734605 tagctcttttgatagtagatgaataaataaagg-aaaatactacgatatcttgttttagaactttttctaatgaaataa 31734528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 422 - 612
Target Start/End: Complemental strand, 55680813 - 55680627
Alignment:
Q  422 aaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatat 521  Q
    |||||||| ||||||||||| |||| |||||||| |||| | || |||||| ||||||||||||| ||||||||||| ||||||| ||||||| || | |    
T  55680813 aaatactatgatatcttgttgtagaactttttctgatgacagaaattgctcgagttagatgtttatatatgtattttaattttcactttagacggtcttt 55680714  T
Q  522 aaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcag 612  Q
    ||||||||||||    ||||| ||   |||||||||||||||||||||||||| |||||||||||| || |||||||||||||||| ||||    
T  55680713 aaataaattaac----atataagtaacggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtatcagtgtcgtgtcag 55680627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 456 - 630
Target Start/End: Original strand, 658541 - 658711
Alignment:
Q  456 aatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcg 555  Q
    |||||||||| |||| ||| ||| ||| |||  |||||||||| |||||||||||||||| | ||| |||||||||     |||||||||   | |||||    
T  658541 aatgaaataaattgcgcaatttatatgcttacgtatgtatttttattttcattttagaccctctattaataaattac----tatatatgtgtcgctgtcg 658636  T
Q  556 gtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtcc 630  Q
    |||||||| |||||||||| |||| |||| || |||||||| |||||||||| || ||||||| |||||||||||    
T  658637 gtgtcctagattttttacattagcagtgttgacgtatccgtgtcagtgtcgtgtcgggtgtccatgtcggagtcc 658711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 309 - 391
Target Start/End: Complemental strand, 3420042 - 3419960
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | || || |||| | |||||||||  |||||||||    
T  3420042 tagatacaagagttacatatgttttgagaaatgttgatcaattaggggttatagatattatagttgattatataatttttagc 3419960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 55681101 - 55681036
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacac 83  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  55681101 gacacctcgaggactaggcgtgtcgcggtgtccgacacgcgtcggtgtccgacactcctatgacac 55681036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 587
Target Start/End: Complemental strand, 35529534 - 35529482
Alignment:
Q  536 gtatatatgtcgaggtgtcggtgtcctatatt-ttttacaatagcggtgtcga 587  Q
    |||||||||| | ||||||||||||||||||| ||||||| ||||||||||||    
T  35529534 gtatatatgtagcggtgtcggtgtcctatatttttttacattagcggtgtcga 35529482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 641
Target Start/End: Original strand, 40289878 - 40289921
Alignment:
Q  598 tcagtgtcgtatcaggtgtccgtgtcggagtccatacttgatag 641  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||||    
T  40289878 tcagtatcgtaccaggtgtccgtgtcggagtccatactttatag 40289921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 658207 - 658272
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacac 83  Q
    ||||||| |||||| |  |||||||| ||||||||||||  |||||||||||||||  ||||||||    
T  658207 gacacctataggaccaagcgtgtcgcagtgtccgacacgtgtcggtgtccgacacttctatgacac 658272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 54306023 - 54305986
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacac 55  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  54306023 gacacctctaggactaggcgtgtcacggtgtccgacac 54305986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 565 - 641
Target Start/End: Complemental strand, 31734495 - 31734419
Alignment:
Q  565 attttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtccatacttgatag 641  Q
    |||||||||| ||| ||||||||||| ||||| || || || | ||||||| || ||||||||||||| ||| ||||    
T  31734495 attttttacactagtggtgtcgaagtgtccgtgtcggtatcctgtcaggtggccatgtcggagtccatgcttcatag 31734419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 287 - 535
Target Start/End: Original strand, 37338714 - 37338962
Alignment:
Q  287 ctctcttgcttccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacattt 386  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |  |  |||||| | ||||| |||||||||    
T  37338714 ctctcttgcttccacataccgt-agatacaagagttacatatgctttgagaaatgttgatcaattagggattttaaacattaaagttgataataacattt 37338812  T
Q  387 ttagcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgttt 485  Q
    ||| ||| ||| || |||||||||||||||||| | |||||||| |||||||||||| | | | |||||||||||||||| |||||||||||||||| ||    
T  37338813 ttaacttttttgatagtagatgaataaataaaggtcaaatactatgatatcttgtttgataacattttctaatgaaataatttgctcaagttagatgctt 37338912  T
Q  486 agatatgtattttcattttcattttagaccgtatataaataaattaacat 535  Q
    | ||||||||||| ||||||| ||||||| || |||||||||||||||||    
T  37338913 atatatgtattttgattttcaatttagactgtctataaataaattaacat 37338962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 309 - 622
Target Start/End: Complemental strand, 46533044 - 46532734
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatg 407  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||||| | ||  ||||||||||||||||||||||||||||||| ||| |  | || ||    
T  46533044 tagatacaagagctacatatattttgaggaatgttgatcaattaggggttataaacattacaattgattataacatttttagcttttttgacagcaggtg 46532945  T
Q  408 aataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcat 507  Q
    |||||| || | | |||||||||| |||||| ||||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||||||||| ||||| ||    
T  46532944 aataaacaatggtcaaatactacgttatcttattttagaactttttcaaatgaaataacttcctcaagttagatgcttatatatgtattttaatttttat 46532845  T
Q  508 tttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgt 607  Q
     ||| |||   |||||||||||||||    |||||||| |  ||||| |||| |||||||||||| | ||||||| || |||| ||||| ||||||||||    
T  46532844 cttaaaccacctataaataaattaac----atatatgtagcagtgtcagtgttctatattttttaaattagcggtatcaaagtgtccgtgtcagtgtcgt 46532749  T
Q  608 atcaggtgtccgtgt 622  Q
     | |||||| |||||    
T  46532748 gtgaggtgtacgtgt 46532734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 201 - 641
Target Start/End: Complemental strand, 27616615 - 27616186
Alignment:
Q  201 cgacactcctaggaccggtgtccgacacctata--acactcat-cgaactgtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgctt 297  Q
    |||||||||||||| ||||||||| ||||||||  |||||||| | | | || ||||||||||||||||||||||| || ||       |||||||||||    
T  27616615 cgacactcctaggaacggtgtccggcacctatatgacactcatacaagccgtgtcggacaactcagacaaatatctgaaacatttttttctctcttgctt 27616516  T
Q  298 ccacatacggttagatacaagagttacatatgttttgagaaatgttgatcaatta-gggttaattgacattacaattgattataacatttttagcttct- 395  Q
    |||||    | ||||||||||||           |||||||||| || ||||||| ||| | || ||||||| | |||||||||||||||||||||| |     
T  27616515 ccacacgtcg-tagatacaagag-----------ttgagaaatgatggtcaattagggggttatagacattaaagttgattataacatttttagcttttc 27616428  T
Q  396 ttatggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtat 495  Q
    | || ||||||| |||||||||  | |||||||| |||||||||||||||| ||| ||||||| ||||||  ||||||||| ||||| |||  || |||     
T  27616427 tgatagtagatgtataaataaaagtcaaatactatgatatcttgttttagaacttgttctaattaaataaactgctcaagtaagatgcttatgtacgtac 27616328  T
Q  496 tttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccg 595  Q
    ||| ||||||||||||||||   |||||||||||||||    ||| |||| | |||||||||||||| ||||||||||| || |||||||||  | ||||    
T  27616327 tttgattttcattttagaccacctataaataaattaac----atacatgtagcggtgtcggtgtcctgtattttttacattaacggtgtcgacatgtccg 27616232  T
Q  596 tatcagtgtcgtatcaggtgtccgtgtcggagtccatacttgatag 641  Q
    | ||||| |||| |||||||| ||||||||||||||| ||| ||||    
T  27616231 tgtcagtatcgtgtcaggtgtacgtgtcggagtccatgcttcatag 27616186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 480 - 642
Target Start/End: Original strand, 44572561 - 44572715
Alignment:
Q  480 atgtttagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagc 579  Q
    ||||||| ||||||||||| ||||||||||||||||   | |||||||||||||||    |||||| | ||||||||| ||||||||||||||||    |    
T  44572561 atgtttatatatgtattttgattttcattttagaccaactttaaataaattaacat----atatgtagcggtgtcggtttcctatattttttaca----c 44572652  T
Q  580 ggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtccatacttgatagg 642  Q
    |||||||| |||||||| |||||||||| ||||| |||||||||||||||||| ||| |||||    
T  44572653 ggtgtcgacgtatccgtgtcagtgtcgtgtcaggagtccgtgtcggagtccatgcttcatagg 44572715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 10678590 - 10678437
Alignment:
Q  203 acactcctaggaccggtgtccgacacctata--acactcat-cgaactgtttcggacaactcagacaaatatctaaagcannnnnnnctctcttgcttcc 299  Q
    ||||||||||||| |||||||||||||||||  |||||||| ||||| || || |||||||||||||||||| |||| ||        ||||||||||||    
T  10678590 acactcctaggactggtgtccgacacctatataacactcatacgaaccgtgtctgacaactcagacaaatatttaaa-catttctttttctcttgcttcc 10678492  T
Q  300 acatacggttagatacaagagttacatatgttttgagaaatgttgatcaattaggg 355  Q
    |||||| || ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  10678491 acataccgt-agatacaagagttacgtatgttttgagaaatattgatcaattaggg 10678437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 532
Target Start/End: Original strand, 32716489 - 32716709
Alignment:
Q  312 atacaagagttacatatgttttgagaaatgttgatcaattagggttaattgacattacaattgattataacatttttagcttcttt-atggtagatgaat 410  Q
    ||||||||||||||||| | ||||||||| ||||| ||| |||| | || ||||||| ||||||||  | |||||||| ||| ||  || || |||||||    
T  32716489 atacaagagttacatatatattgagaaattttgat-aatgagggattatagacattaaaattgattgcaccatttttaactttttcgatagtggatgaat 32716587  T
Q  411 aaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcatttt 510  Q
    |||||||||| ||||||||   |||||||||||||| |||||| |||| ||| || ||  ||||||||||| |  | ||||||||||| |||||||||||    
T  32716588 aaataaagatcaaatactattgtatcttgttttagaactttttttaataaaacaaattattcaagttagatatacatatatgtattttgattttcatttt 32716687  T
Q  511 agaccgtatataaataaattaa 532  Q
    ||||  | ||||||| ||||||    
T  32716688 agacaatctataaattaattaa 32716709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 372 - 585
Target Start/End: Complemental strand, 22290989 - 22290779
Alignment:
Q  372 ttgattataacatttttagcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgc 470  Q
    |||||||||  ||||||||||| ||| || |||||| ||||||||||| | |||||| | ||||||||||| |||| |||||| ||||||||||| |||     
T  22290989 ttgattatataatttttagcttttttgatagtagattaataaataaaggtcaaatacaatgatatcttgttgtagaactttttttaatgaaataaattgt 22290890  T
Q  471 tcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttt 570  Q
    | ||||||  |||||| ||||||| |||  ||||| |||||||| || | |||| ||||||||||    | |||| | ||| ||||||||||||||||||    
T  22290889 ttaagttaattgtttatatatgtaatttatttttccttttagactgtctttaaacaaattaacat----aaatgtagtggtatcggtgtcctatattttt 22290794  T
Q  571 tacaatagcggtgtc 585  Q
    || | ||| ||||||    
T  22290793 taaattagtggtgtc 22290779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 373 - 494
Target Start/End: Original strand, 45215999 - 45216121
Alignment:
Q  373 tgattataacatttttagcttcttt-atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgct 471  Q
    |||||||| |||||||||||| ||| |  |||||||||||||||||| | ||||| || || ||||| || |||| ||||||||||||| |||| |||||    
T  45215999 tgattatatcatttttagcttttttgacagtagatgaataaataaaggtcaaataatatgacatcttattgtagaactttttctaatgacataaattgct 45216098  T
Q  472 caagttagatgtttagatatgta 494  Q
    |||||||| |||||| |||||||    
T  45216099 caagttagttgtttatatatgta 45216121  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 642
Target Start/End: Original strand, 45216124 - 45216215
Alignment:
Q  549 ggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatcagtgtcgtatcaggtgtccgtgtcggagtccatacttgatagg 642  Q
    |||||| ||||| ||||||||||||| |||||||||||| || ||||| |||||||||| ||||||||||||||  |||||||| ||| |||||    
T  45216124 ggtgtccgtgtcttatattttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaggtgtccgtgt--gagtccatgcttcatagg 45216215  T

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Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 22291226 - 22291163
Alignment:
Q  21 acctctaggactagccgtgtcgcggtgtccgacacgcttcggtgtccgacactcttatgacacc 84  Q
    |||||||||||||| | |||||| ||||||||||||| |||||||||||||||| |||||||||    
T  22291226 acctctaggactaggcatgtcgcagtgtccgacacgcgtcggtgtccgacactcctatgacacc 22291163  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 500 - 601
Target Start/End: Complemental strand, 10678338 - 10678241
Alignment:
Q  500 attttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgtatc 599  Q
    |||||||||||||||| ||||||||||||||||    ||||||| |   | |||||||||||||||||||||| | ||| ||||||||||| | ||||||    
T  10678338 attttcattttagaccatatataaataaattaa----tatatatctaacgatgtcggtgtcctatattttttaaactagtggtgtcgaagtgttcgtatc 10678243  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 429
Target Start/End: Original strand, 44572492 - 44572559
Alignment:
Q  363 acattacaattgattataacatttttagcttcttt-atggtagatgaataaataaagataaaatacta 429  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||||||||||||| | ||||||||    
T  44572492 acattacaattgattatatcatttttagcttttttgatagtagatgaataaataaaggtcaaatacta 44572559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 531
Target Start/End: Original strand, 44182664 - 44182794
Alignment:
Q  401 gtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttca 500  Q
    |||||| ||||||||||| | | |||||| ||||| || |||||||   |||| | ||||||||| ||| |||   ||||| |||| ||||||||||| |    
T  44182664 gtagataaataaataaaggtcatatactatgatattttattttagaatattttttgatgaaataaattgttcatactagatatttatatatgtattttga 44182763  T
Q  501 ttttcattttagaccgtatataaataaatta 531  Q
    |||| |||||||| ||| |||||||||||||    
T  44182764 tttttattttagatcgtctataaataaatta 44182794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 532
Target Start/End: Complemental strand, 27994002 - 27993868
Alignment:
Q  398 atggtagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattt 497  Q
    |||||||||| |||||||||||| || | |||   ||||||||| |||| |||| | ||||||||||| |||||||||||| |||  ||  |||||||||    
T  27994002 atggtagatggataaataaagatcaattgctattgtatcttgttatagaactttatttaatgaaataaattgctcaagttaaatgcatatgtatgtattt 27993903  T
Q  498 tcattttcattttagaccgtatataaataaattaa 532  Q
    | ||| | | |||| | | | ||||||||||||||    
T  27993902 tgattcttagtttatatcttttataaataaattaa 27993868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 46533258 - 46533220
Alignment:
Q  17 agacacctctaggactagccgtgtcgcggtgtccgacac 55  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  46533258 agacacctctaggactaaccgcgtcgcggtgtccgacac 46533220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 641
Target Start/End: Complemental strand, 10678249 - 10678212
Alignment:
Q  604 tcgtatcaggtgtccgtgtcggagtccatacttgatag 641  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  10678249 tcgtatcaggtgtccgtgtcggagtccatgcttcatag 10678212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 10678435 - 10678398
Alignment:
Q  410 taaataaagataaaatactacgatatcttgttttagag 447  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  10678435 taaataaagctcaaatactacgatatcttgttttagag 10678398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 10678704 - 10678671
Alignment:
Q  19 acacctctaggactagccgtgtcgcggtgtccga 52  Q
    ||||||||||||||| ||||||||||||||||||    
T  10678704 acacctctaggactaaccgtgtcgcggtgtccga 10678671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 44572289 - 44572326
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacac 55  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  44572289 gacacctctacgactaggcgtgtcgcggtgtccgacac 44572326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 45215802 - 45215839
Alignment:
Q  18 gacacctctaggactagccgtgtcgcggtgtccgacac 55  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  45215802 gacacctccaggactaggcgtgtcgcggtgtccgacac 45215839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 600 - 632
Target Start/End: Complemental strand, 8799660 - 8799628
Alignment:
Q  600 agtgtcgtatcaggtgtccgtgtcggagtccat 632  Q
    |||||||| ||||||||||||||||||||||||    
T  8799660 agtgtcgtgtcaggtgtccgtgtcggagtccat 8799628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 45215885 - 45215960
Alignment:
Q  204 cactcctaggaccggtgtccgacaccta--taacactcat-cgaactgtttcggacaactcagacaaatatctaaa 276  Q
    |||||||| || ||||||||||||||||  |||||||||| ||| | || ||||||||| ||| ||||||||||||    
T  45215885 cactcctacgatcggtgtccgacacctatgtaacactcatacgagccgtgtcggacaacccagtcaaatatctaaa 45215960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 327 - 586
Target Start/End: Complemental strand, 13051 - 12794
Alignment:
Q  327 atgttttgagaaatgttgatcaattagg-gttaattgacattacaattgattataacatttttagcttcttt-atggtagatgaataaataaagataaaa 424  Q
    |||| |||||||| |||||||||||||| | | || || |||| | ||||||| ||  |||||||||| ||| || |||||||||||||||||  | |||    
T  13051 atgtgttgagaaacgttgatcaattaggaggttatagaaattaaagttgattacaatgtttttagcttttttgatagtagatgaataaataaatgtcaaa 12952  T
Q  425 tactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcattttcattttagaccgtatataaa 524  Q
    ||||| || |||||||||| || ||||||   ||||||||| |||||||||||| ||  |||  | |||||||| ||||||||||||| || | | ||||    
T  12951 tactaggacatcttgttttcgaacttttttcgatgaaataaattgctcaagttaaattcttatgtttgtattttgattttcattttaggccttctgtaaa 12852  T
Q  525 taaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcg 586  Q
    ||||||||    ||||||||| | |||||||||||||| ||||||||||| |||| ||||||    
T  12851 taaattaa----tatatatgtagcggtgtcggtgtcctgtattttttacattagcagtgtcg 12794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 309 - 596
Target Start/End: Original strand, 70042 - 70329
Alignment:
Q  309 tagatacaagagttacatatgttttgagaaatgttgatcaattag-ggttaattgacattacaattgattataacatttttagctt------ctttatgg 401  Q
    ||||||||||| |||||||||| |||||||||||||||||||||| || | || || |||| | |||||||   ||||||||||||      ||||||      
T  70042 tagatacaagaattacatatgtgttgagaaatgttgatcaattagagggttatagaaattaaagttgatta---catttttagcttttttttctttatat 70138  T
Q  402 tagatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatgtttagatatgtattttcat 501  Q
    ||||||||||||||||  | |||||||| |||||||||||||||| ||||||  ||| || ||| |||||| ||||| ||  ||| || || ||||| ||    
T  70139 tagatgaataaataaatgtcaaatactatgatatcttgttttagaacttttttcaataaagtaaattgctcgagttaaattcttatatttgcattttaat 70238  T
Q  502 tttcattttagaccgtatataaataaattaacatgtatatatgtcgaggtgtcggtgtcctatattttttacaatagcggtgtcgaagtatccgt 596  Q
    |||||| ||||||| | ||||| |||||| |    |||| |||| | ||||||  ||| || | ||||||||| |||||||||||| ||||||||    
T  70239 tttcatcttagaccatctataagtaaattga----tatacatgtagtggtgtctatgtactgtgttttttacattagcggtgtcgacgtatccgt 70329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 482
Target Start/End: Original strand, 404 - 483
Alignment:
Q  403 agatgaataaataaagataaaatactacgatatcttgttttagagctttttctaatgaaataacttgctcaagttagatg 482  Q
    ||||| |||||||||| | ||||||||   ||||||||| ||||  ||||| ||||||||||| ||||||||||||||||    
T  404 agatggataaataaaggtcaaatactattgtatcttgttatagaattttttttaatgaaataatttgctcaagttagatg 483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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