View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9558_low_11 (Length: 229)
Name: NF9558_low_11
Description: NF9558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9558_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34342325 - 34342103
Alignment:
| Q |
1 |
ctctttcagacaacaaactcgttgaccaaataccaacctctatagttgactgcagaaagcttgagattctgaaccttgctaataatcttttctctggtga |
100 |
Q |
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| T |
34342325 |
ctctttcagacaacaaactcgttgaccaaataccaacctctatagttgactgcagaaagcttgagtttctgaaccttgctaataatcttttctctggtga |
34342226 |
T |
|
| Q |
101 |
agttccttctgaattctcttctctcattcgtcttcgctttcttgatatctctggaaataaactgtccggaaacttgaatttccttaggtattttcccaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
34342225 |
agttccttctgaattctcttctctcattcgtcttcgctttcttgatatctctggaaataaactttctggaaacttgaatttccttaggtattttcccaat |
34342126 |
T |
|
| Q |
201 |
ctggaaactctttctgttgcaga |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
34342125 |
ctggaaactctttctgttgcaga |
34342103 |
T |
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